Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq18 178 2e-39 seq2 159 6e-34 seq16 134 3e-26 seq6 127 4e-24 >seq18 Length=77673080 Score = 178 bits (196), Expect = 2e-39 Identities = 391/578 (68%), Gaps = 25/578 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||||||||| | ||| |||||||||||| || | || || Sbjct 68188833 ATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTC 68188774 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACG---AGCAGCATTTTCTCAAG 25593 || |||||| || |||| | ||| ||| |||| ||| || || |||| Sbjct 68188773 TCCCAGGACACACGCGACTGGGAGAATCT---CAACGACGGAGAGCGCCACTTCATCAAA 68188717 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||| || ||||| || || || || |||||| || | | Sbjct 68188716 CACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCGTCCTCGAGAACCTCGCCTCACGG 68188657 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| || || ||| | ||||| |||||||| |||||||| || ||| Sbjct 68188656 TTCATGTCCGACGTCCAGGTCTCCGAGGCGCGCGCCTTCTACGGGTTCCAGATCGCGATC 68188597 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTC 25770 || || | ||||| ||| |||| || || ||| | |||||||| | ||| | Sbjct 68188596 GAGAACATCCACTCCGAGATGTA---CAGCCTCCTGTTAGACACGTACATCAAGGACAAC 68188540 Query 25771 GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830 ||||| || | || || | || |||||| ||| ||| || || || |||||| Sbjct 68188539 AAGGAGAGGGACCATCTCTTCCGCGCGATCGAGACCATCCCCTGCGTCGCGAAGAAGGCC 68188480 Query 25831 CGGTGGGCCATGAAGTGGATCAACAG---CCAGAGCGCTACGTTTGGCGAGCGGCTGGTA 25887 | |||||||||| ||||||| | | ||||| | || | |||| || | || Sbjct 68188479 CAATGGGCCATGACGTGGATCGATGGGTCCCAGA------CTTTCGCCGAGAGGATCGTG 68188426 Query 25888 GCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGC 25945 ||||| || ||| ||||| || ||||| ||| |||| || ||| | |||||||||| Sbjct 68188425 GCCTTCGCGTGC-GTGGAAGGGATCTTCTTCTCCGGTAGCTTCTGCT-CGATCTTCTGGC 68188368 Query 25946 TCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACG 26005 ||||| || ||| |||||||||| || ||| ||||||||||| ||| || |||| Sbjct 68188367 TCAAGAAGCGAGGGCTCATGCCCGGGTTGACCTTCTCCAACGAGCTGATCTCGAGAGACG 68188308 Query 26006 AGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACG 26043 | || || ||| | ||||| || |||||| |||||||| Sbjct 68188307 AAGGCCTTCACTGCGATTTCGCGTGCCTGATCTACACG 68188270 >seq2 Length=25468329 Score = 159 bits (176), Expect = 6e-34 Identities = 393/577 (68%), Gaps = 22/577 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||||||||||||||||| || || ||| |||||||||||| || | || || Sbjct 22244272 ATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTC 22244213 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATC-CAAAGACG---AGCAGCATTTTCTCAA 25592 || | |||| || |||| | | | | | ||| |||| ||| || || |||| Sbjct 22244212 TCCCAAGACACCCGCGACTGGGAGAC-CAACCTCAACGACGGCGAGCGCCACTTCATCAA 22244154 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 |||| | || ||||| || ||||| || || || || ||||||||| | | Sbjct 22244153 ACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCGTCCTCGAGAATCTCGCCTCCCG 22244094 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGT-TTCTACGGTTTCCAGATGGCCA 25711 |||| || |||||| | ||||| ||| |||||||| |||||||| || | Sbjct 22244093 GTTCATGTCCGACGTGCAGGTCTCCGAGGCGC-GTGCCTTCTACGGGTTCCAGATCGCGA 22244035 Query 25712 TCGAAAATGTGCACTCTGAGGTGTAT-GCCAAGCTT-CT-GATGACGTACATTACAGACG 25768 | || ||| | ||||| ||| |||| ||| ||| || ||| |||||||| | ||| Sbjct 22244034 TTGAGAATATCCACTCGGAGATGTACAGCCT--CTTGCTAGAT-ACGTACATCAAGGACA 22243978 Query 25769 TCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 | ||||| || | || || | || || ||| ||| || || || || ||||| Sbjct 22243977 ACAAGGAGAGGGACCATCTCTTCCGCGCGATTGAGACCATCCCTTGCGTCGCGAAGAAGG 22243918 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTA 25887 | | |||||| ||||||||||| || | | || || || | |||| || | || Sbjct 22243917 CCCAATGGGCCTTGAAGTGGATCGACGGATCTCAG----ACTTTCGCCGAGAGGATCGTG 22243862 Query 25888 GCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGC 25945 ||||| || ||| ||||| || ||||| ||| ||| || ||| |||||||||||| Sbjct 22243861 GCCTTCGCGTGC-GTGGAAGGGATCTTCTTCTCCGGAAGCTTCTGCT-CCATCTTCTGGC 22243804 Query 25946 TCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACG 26005 ||||| || ||| |||||| ||||| ||| ||||||||||| ||| |||||| Sbjct 22243803 TCAAGAAGCGAGGGCTCATGCCGGGGCTCACCTTCTCCAACGAGCTGATCTCGCGGGACG 22243744 Query 26006 AGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042 | || || ||| | || || || |||||| |||| || Sbjct 22243743 AAGGCCTTCACTGCGACTTCGCGTGCCTGATCTATAC 22243707 >seq16 Length=18736220 Score = 134 bits (148), Expect = 3e-26 Identities = 379/573 (66%), Gaps = 18/573 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||||||||||||||||| || || ||| |||||||||||| || | || || Sbjct 836401 ATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTC 836460 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATC-CAAAGACG---AGCAGCATTTTCTCAA 25592 || | ||| || |||| | | ||| ||| |||| ||| || || |||| Sbjct 836461 TCCCAAGACCCCCGCGACTGGGAGGAAA-ATCTCAACGACGGAGAGCGCCACTTCGTCAA 836519 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 |||| | || ||||| || || || || || || || |||||| || | | Sbjct 836520 ACACGTCCTCGCCTTCTTCGCCGCATCCGACGGGATCGTCCTCGAGAACCTCGCCTCTCG 836579 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| || || ||| | |||||| |||||||| |||||||| || || Sbjct 836580 TTTCATGTCCGACGTCCAGGTCTCCGAGGCCCGCGCCTTCTACGGGTTCCAGATCGCGAT 836639 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGT 25769 ||| || | ||||| ||| |||| || || ||| | || ||||| | || Sbjct 836640 CGAGAACATCCACTCCGAGATGTA---CAGTCTCCTGTTAGATACTTACATCAAGGATAA 836696 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 ||||| || | || || | || |||||| || ||| || || || |||||| Sbjct 836697 TAGAGAGAGGGACCATCTCTTCCGCGCGATCGAGACGATCCCCTGCGTCGCGAAGAAGGC 836756 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888 | |||||||||| ||||||| || | || || || ||| |||| || | || | Sbjct 836757 CCAATGGGCCATGACGTGGATCGACGGATCACAGGCCT----TTGCCGAGAGGATCGTGG 836812 Query 25889 CCTTTGCTGCTGTGGAGGGCATCTTTTTCA-GCGGTTCGTTTGCGGCCATCTTCTGGCTC 25947 | |||||| ||||| || ||||| ||| | || | | ||| | |||||||||||| Sbjct 836813 CGTTTGCTTGCGTGGAAGGGATCTTCTTCTCGGGGAGCTTCTGCT-CGATCTTCTGGCTC 836871 Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 ||| || ||| |||||| ||||| ||| ||||||||||| ||| || ||||| Sbjct 836872 AAGAAGCGTGGGCTCATGCCGGGGCTCACCTTCTCCAACGAGCTGATCTCGAGAGACGAA 836931 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 || || ||| | || || || |||||| ||||| Sbjct 836932 GGCCTGCACTGCGACTTCGCGTGCCTGATCTAC 836964 >seq6 Length=38054609 Score = 127 bits (140), Expect = 4e-24 Identities = 379/575 (66%), Gaps = 21/575 (4%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||||||||| | ||| ||||||||||||||| | ||||| Sbjct 29819607 ATCTGGGAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAAGAAGTCGATCTC 29819666 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACG---AGCAGCATTTTCTCAAG 25593 || | |||| || |||| | ||| ||| |||| ||| || || |||| Sbjct 29819667 TCCCAAGACACTCGCGACTGGGAGAATCT---CAACGACGGAGAGCGCCACTTCATCAAA 29819723 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||| || || || || || || || |||||||| | | Sbjct 29819724 CACGTCCTCGCCTTCTTCGCCGCATCCGACGGAATCGTTTTAGAGAATCTCGCCTCCCGG 29819783 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGT-TTCTACGGTTTCCAGATGGCCAT 25712 |||| || ||||| | ||||| ||| |||||||| |||||||| || || Sbjct 29819784 TTCATGTCCGACGTGCAAGTCTCCGAGGCGC-GTGCCTTCTACGGGTTCCAGATCGCGAT 29819842 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGT 25769 || ||| | ||||| ||| |||| || || ||| | |||||||| | || Sbjct 29819843 TGAGAATATCCACTCAGAGATGTA---CAGCCTCCTGCTCGACACGTACATCAAGGATAA 29819899 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 ||||| || | || || | || || || |||||| || || || |||||| Sbjct 29819900 TAAAGAGAGGGACCACCTCTTCCGCGCGATTGAAACCATACCTTGCGTCGCGAAGAAGGC 29819959 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888 | |||||||||| ||||||| || | | || || || | |||| || | || | Sbjct 29819960 CCAATGGGCCATGACGTGGATCGACGGATCTCAG----ACTTTCGCCGAGAGGATCGTGG 29820015 Query 25889 CCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTC 25947 | |||||| ||||| || ||||| ||| ||| || ||| | ||||||||||| Sbjct 29820016 CGTTTGCTTGCGTGGAAGGGATCTTCTTCTCCGGAAGCTTCTGCT-CGATCTTCTGGCTG 29820074 Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 ||| || ||| |||||| ||| | ||| ||||||||| | ||| | ||||| Sbjct 29820075 AAGAAGCGAGGGCTCATGCCTGGGTTAACCTTCTCCAACGAGTTGATCTCTCGAGACGAA 29820134 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042 || || ||| | || || || |||||| |||| || Sbjct 29820135 GGCCTTCACTGCGACTTCGCGTGCCTGATCTATAC 29820169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928731643482240