Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq9 284 1e-71 seq14 230 2e-55 seq8 123 3e-23 seq390 93.3 4e-14 seq60 93.3 4e-14 seq12 84.2 2e-11 >seq9 Length=62778564 Score = 284 bits (314), Expect = 1e-71 Identities = 409/571 (72%), Gaps = 8/571 (1%) Strand=Plus/Minus Query 10195 CAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGT--CAGTGTTTTCCTCATCTAT 10252 |||| | ||| | || ||||| || |||||||||||||| |||| ||| || || ||| Sbjct 56234949 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTT--CTAATTTAT 56234892 Query 10253 CCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGC 10312 ||||| || || ||| ||||||||||| ||| ||||| || || ||||| || || || Sbjct 56234891 CCACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGA 56234832 Query 10313 TTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGA 10372 ||| | ||||| |||| || |||||||||||| | || ||| | || ||| |||||||| Sbjct 56234831 TTCATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGATGGGA 56234772 Query 10373 GTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCACGGAGTCACTGTAGAAAAC 10432 |||| ||| |||| || | ||| || ||| || || | || | ||||||| ||| Sbjct 56234771 ATTGCCGGTGTACTTGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAG-AAAT 56234713 Query 10433 ACACTTTATC--AAGATGGCGAACAAGCAAACACTTTCAAAGCTTTTGATAGCACTCAAG 10490 | |||||| || |||| || ||||| | || |||||| | | ||||| Sbjct 56234712 ATTTTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAG 56234653 Query 10491 AAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTG 10550 ||||| || ||||| ||||| || |||||||| || ||||| | || ||||| || Sbjct 56234652 CCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTG 56234593 Query 10551 CTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATGGGTCTTT 10610 ||||| |||||||| ||| | || ||||||||| | |||||||| || | ||| | Sbjct 56234592 CTTTTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAA 56234533 Query 10611 GGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTAT 10670 ||| | || ||| ||| | ||||| ||| | || || |||| || | || | | Sbjct 56234532 GGATGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTT 56234473 Query 10671 CTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAATATCC 10730 | ||||| || | || | |||||||| | | |||| || |||||||| || ||||| | Sbjct 56234472 CCCAAGAAATTTGTGCAGCGGAAGATCC-GGACTTGAAACTTTCTATACTAAAAATATTC 56234414 Query 10731 TTCTGAACGAAGGTCTTCGTGCATGGATGGC 10761 || | ||||||||| |||| | |||||||| Sbjct 56234413 TTTTAAACGAAGGTATTCGCACTTGGATGGC 56234383 Score = 136 bits (150), Expect = 4e-27 Identities = 261/370 (71%), Gaps = 15/370 (4%) Strand=Plus/Plus Query 8287 GTCGGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTG-CCGCTACAATTTGCTTCAT 8345 || || |||||||| ||| | |||||||| ||| | ||| ||||||| || | | | Sbjct 10190664 GTTGGATGGTTTGGTGTTTTGATGATCCCTACCTTAATTGACCGCTAC---TTCCGTTTT 10190720 Query 8346 TACCGCATTCGTTGCTGCT-CCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTG-CT 8403 || |||| |||||||| |||| || || || || | || | ||||| ||| || Sbjct 10190721 TATTAGATTCATTGCTGCTTCCTCTAGTAGATATTGAGTGTATT-GTGAACCTGTTTTCT 10190779 Query 8404 GGATCTCTCATGTACGGT--AACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACG 8461 || ||||| | || ||| ||||| || | || |||||| | ||| ||| | | Sbjct 10190780 GG-TCTCTTCTTTAAGGTGAAACAATATTAGTTCCGGTGCATTATTTCTACTGTCTCAGG 10190838 Query 8462 -CAAT-TGGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAG-TGGCTCT 8518 | || ||| | || || ||| |||||||| |||| || || ||||||| ||||| | Sbjct 10190839 GCTATGTGGTTTGCATTTTTACGCCATCTGG-AAGCTGCATCCGTTGATGAAATGGCTAT 10190897 Query 8519 ACAACGGTGGTC-CTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTAT 8577 |||| ||||| |||| | || | ||| | ||||| | ||||| || | |||| Sbjct 10190898 ACAAACGTGGTTGCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTAT 10190957 Query 8578 ATGGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCA 8637 ||||||||||| ||||||||| || ||| || || |||||||||||||| ||||||| Sbjct 10190958 ATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCA 10191017 Query 8638 TACTCTGCTC 8647 || || |||| Sbjct 10191018 TATTCAGCTC 10191027 Score = 82.4 bits (90), Expect = 8e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 8545 GTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGAATGGGAACTTTCTTAC 8604 ||| | ||||| | ||||| || | ||||||||||||||| ||||||||| || | Sbjct 10184720 GTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 10184661 Query 8605 CGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTC 8647 || || || |||||||||||||| ||||||||| || |||| Sbjct 10184660 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTC 10184618 >seq14 Length=28343526 Score = 230 bits (254), Expect = 2e-55 Identities = 228/294 (78%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 8569 TTTGCTTATATGGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATC 8628 |||| |||||||| | |||| ||||||||| || | | || || || ||||||||||| Sbjct 20844994 TTTG-TTATATGGATTGTGAGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATT 20845052 Query 8629 TGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTT 8688 ||||||||| || | ||||||||| ||||| || ||| ||| | ||| || || Sbjct 20845053 GCTGTTGCATATTCAGATCCTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATT 20845112 Query 8689 GGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATG 8748 | |||||| || |||||| |||||||||| || ||||| ||||| ||||||| |||| Sbjct 20845113 GATCAAGGAAGTTTTTCTGATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATG 20845172 Query 8749 CTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCT 8808 |||| ||||| ||||||||||||| || |||||||| || |||||| | ||||| ||| Sbjct 20845173 GTTGTATTCCAAACTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCT 20845232 Query 8809 GGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGGTTCACTCGTTACTTCT 8862 ||||| |||||||| ||||| ||| || |||||| |||| || || | |||| Sbjct 20845233 GGTGTATTCGGCGGCTCTCTTTTTAGTGCTATGCATAGTTCCCTGGTAATTTCT 20845286 >seq8 Length=29345952 Score = 123 bits (136), Expect = 3e-23 Identities = 112/139 (81%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 8711 GTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACA 8770 |||||||||| | ||||| ||||| ||||||| |||| |||| |||||||||||||||| Sbjct 6844673 GTATGCCTCTAGA-ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACA 6844731 Query 8771 ACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCT 8830 |||| || ||||||| ||| ||| | ||||| |||||||| |||||||| || || | Sbjct 6844732 ACATTCTTATGCACCATTTC--AATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTAT 6844789 Query 8831 TTTCCGCAATGCATGGTTC 8849 || || |||||| |||| Sbjct 6844790 TTAGTGCTATGCATAGTTC 6844808 >seq390 Length=101491 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 10106 GCTTTTGTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAG 10165 |||||||| || ||||| || || ||||| ||||| || ||||||||||| || ||||| Sbjct 2249 GCTTTTGTTGCTCTCCATGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAA 2308 Query 10166 CTGGCGAGATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGC 10224 || || ||| || | | |||||||| ||||| ||||| || ||||| || ||||| Sbjct 2309 CTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGC 2367 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 10278 TTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTC 10337 ||||| | ||||| || || ||||| || || || ||| | | ||| |||| | |||| Sbjct 2364 TTGCGTCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCACTTTTTCCAACGGTTTC 2423 Query 10338 ATAATTGGACGCTCAATCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGC 10395 |||||||||| | || || || |||||||||||||| |||||| ||||||| | ||| Sbjct 2424 ATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGC 2481 >seq60 Length=523306 Score = 93.3 bits (102), Expect = 4e-14 Identities = 171/251 (68%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 10007 TCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 10066 || || |||||| || | | | |||||| | | ||| |||| |||||| | || Sbjct 21486 TCTACTCCTGCTAATAGTTTAGCGCATTCTTTGATGTAACTGTGGGATCCTGAAGCACAA 21545 Query 10067 GGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGA 10126 |||||||| || ||| || || || || | ||||||||||| || |||||| | Sbjct 21546 GGAGATTTTACTCGTTGGTGTCAACTAGGCGGTATGTGGGCTTTTGTTGCTCTCCACTGT 21605 Query 10127 GCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAGATTAATTGGAATC 10186 || ||| | ||||| || |||||||| | | ||||| || || ||| || | | Sbjct 21606 GCTTTCACATTAATAGGTTTTATGTTGCATTAATTTGAACTTGCTCGATCTGTTCAATTG 21665 Query 10187 CGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTCAGTGTTTTCCTC 10246 |||||||| ||||| | || || | ||| | |||| ||||||||| || || || Sbjct 21666 CGACCTTATAATGCAGTTGCATTCTTTGGTCTAATTGATGTTTTTGTTTCCGTCTTTCTA 21725 Query 10247 ATCTATCCACT 10257 || ||||| || Sbjct 21726 ATTTATCCTCT 21736 >seq12 Length=60369500 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 8653 GCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGT 8712 || |||||| ||||||| ||| | |||| || |||||||| | || ||||||||| Sbjct 27415793 GCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAAGAAGTTTTTCTGATGGT 27415734 Query 8713 ATGCCTCTTGGTATCTCCGGTACGTTCAACTATATG 8748 |||||||| || ||||| ||||| ||||||| |||| Sbjct 27415733 ATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATG 27415698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516417079824000