Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq13 82.4 6e-11 seq5 82.4 6e-11 seq1 82.4 6e-11 >seq13 Length=83567108 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || || ||||| || || ||||| || ||| || Sbjct 62907154 ATGCAGATCTTTGTCAAGACGTTGACGGGAAAGACTATTACTTTGGAGGTGGAGAGCTCC 62907213 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || |||| ||| ||| ||||||||||| | || || || Sbjct 62907214 GACACCATTGACAATGTCAAAGCAAAGATCCAAGACAAAGAGGGTATTCCTCCGGACCAG 62907273 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| | |||||||| ||||| || | || ||| | |||| | || || || ||| Sbjct 62907274 CAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGATGGAAGAACTCTTGCTGACTACAAC 62907333 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| || || |||||||| ||| |||| || | |||| ||||| || Sbjct 62907334 ATTCAGAAGGAGTCTACTCTCCACTTGGTCTTGCGTCTACGTGGAGGCAT 62907383 >seq5 Length=38841276 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 28638 AAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAA 28697 |||||| ||||||||||| | || ||| || ||||| || ||||| || |||||| Sbjct 24217676 AAAATCCAGGACAAAGAGGGTATTCCTCCAGACCAGCAGAGGCTGATCTTCGCTGGCAAA 24217735 Query 28698 CAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCAC 28757 || | || ||| | ||| |||| || |||||||| || |||||||| ||||| ||| Sbjct 24217736 CAGCTTGAGGATGGTCGTACTTTGGCTGACTATAACATCCAGAAAGAATCAACTCTTCAC 24217795 Query 28758 ATGGT 28762 |||| Sbjct 24217796 CTGGT 24217800 >seq1 Length=45320942 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 28638 AAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAA 28697 |||||| ||||| ||||| | || || || ||||| |||||||| || || || Sbjct 18861477 AAAATCCAGGACAAGGAGGGTATTCCTCCCGACCAGCAGAGGCTTATCTTCGCTGGAAAG 18861418 Query 28698 CAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCAC 28757 |||||||||||| | || |||||||||| |||||||| || || ||||| || ||| Sbjct 18861417 CAATTGGAAGATGGCAGGACCTTGGCCGATTACAACATTCAGAAGGAGTCTACGCTTCAC 18861358 Query 28758 ATGGT 28762 |||| Sbjct 18861357 TTGGT 18861353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425354270683734