Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq14 212 7e-50 seq9 113 5e-20 seq8 111 2e-19 seq17 105 7e-18 seq28 102 9e-17 seq16 93.3 5e-14 seq18 87.8 2e-12 seq3071 82.4 8e-11 >seq14 Length=28343526 Score = 212 bits (234), Expect = 7e-50 Identities = 216/282 (77%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 161202 TTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGT 161261 ||| |||| | |||||||||||||| || | ||||||| || |||||||||||| || Sbjct 20844998 TTATATGGATTGTGAGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATTGCTGT 20845057 Query 161262 AGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCA 161321 ||||| || | |||||| || | || | || || ||| || ||| || | | ||| Sbjct 20845058 TGCATATTCAGATCCTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATTGATCA 20845117 Query 161322 AGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTACATGCTTGT 161381 ||| ||| |||||| |||||||| || ||||||||||| ||||||| ||| |||| Sbjct 20845118 AGGAAGTTTTTCTGATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGT 20845177 Query 161382 CTTCCAAGCAGAGCACAACATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGT 161441 |||||| | |||||||||||||| |||||||| || || ||| | || ||||| ||||| Sbjct 20845178 ATTCCAAACTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 20845237 Query 161442 GTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGT 161483 || ||||| ||||| || ||||| ||||| |||| ||||| Sbjct 20845238 ATTCGGCGGCTCTCTTTTTAGTGCTATGCATAGTTCCCTGGT 20845279 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 158325 GTGTGAAGACGACCAGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTA 158384 ||| || |||||| ||| |||| ||||| ||||||||||| || |||| | ||| Sbjct 23727171 GTGCGACGACGACGTCTACGTCCTCGACGCTGCTGAGGAAGCCGGAATCGACTTGCCTTA 23727230 Query 158385 CTCGTGCCGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGA 158444 ||| |||||||| || |||| || ||||| || ||| | || ||||| | || || Sbjct 23727231 CTCTTGCCGTGCTGGTTCTTGCTCCAGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTTGA 23727290 Query 158445 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTG 158504 ||| |||||| ||||| || |||||||| || | | || ||| |||| ||||| Sbjct 23727291 CCAGTCTGACCAGAGTTTCCTCGATGATGACCAGATTGCTGAAGGATTCGTTCTCACTTG 23727350 Query 158505 TGTTTCTTATCCTACAAGTGATTGTGTGATTGAGACTGACAAGGAAGAGGA 158555 || |||||||||| |||| | |||||||| ||| ||||| || Sbjct 23727351 TGCGGCTTATCCTACTTCTGATGTTACCATTGAGACCCACAGAGAAGAAGA 23727401 >seq9 Length=62778564 Score = 113 bits (124), Expect = 5e-20 Identities = 260/375 (69%), Gaps = 25/375 (7%) Strand=Plus/Plus Query 160915 GTTGGTTGGTTCGGCGTCCTGATGATTCCCTGC-----TTGCTCGCTGCTACCATTTGTT 160969 ||||| ||||| || || ||||||| |||| | ||| |||| || || ||| | Sbjct 10190664 GTTGGATGGTTTGGTGTTTTGATGAT-CCCTACCTTAATTGACCGCTACTTCCGTTTTT- 10190721 Query 160970 TCATCATTGCCTTCGTTGGTGCTCCCCCT-GTGGACATCGACGGCATTCGTGAACCCGTC 161028 ||| ||| ||| |||| || || || || || || | ||| ||||||| || Sbjct 10190722 -----ATTAGATTCATTGCTGCTTCCTCTAGTAGATATTGAGTGTATT-GTGAACCTGTT 10190775 Query 161029 G-CTGGTTCGCTCATGTATGG--AAACAACATCATCTCTGGTGCTGTTATCCCTTCT-TC 161084 ||||| | || | || || |||||| || | || ||||| |||| || || || Sbjct 10190776 TTCTGGT-CTCTTCTTTAAGGTGAAACAATATTAGTTCCGGTGCA-TTATTTCTACTGTC 10190833 Query 161085 TAACG-CTATC-GGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAA-TG 161141 | | | |||| ||| |||| || ||| |||||||| |||| ||| | || ||| || Sbjct 10190834 TCAGGGCTATGTGGTTTGCATTTTTACGCCATCTGG-AAGCTGCATCCGTTGATGAAATG 10190892 Query 161142 GCTCTACAACGGTGGTC-CTTTCCAACTCGTTGTGTTCCACTTCCTGATTGGCATCTATG 161200 ||| ||||| ||||| ||| |||| |||| | ||||| | |||| | | Sbjct 10190893 GCTATACAAACGTGGTTGCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTT 10190952 Query 161201 CTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCG 161260 ||| ||||||||||||||||||||| || ||||||||| ||||||||||||||| | Sbjct 10190953 GTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTG 10191012 Query 161261 TAGCATACTCTGCTC 161275 | ||||| || |||| Sbjct 10191013 TTGCATATTCAGCTC 10191027 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 161202 TTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGT 161261 ||| ||||||||||||||||||||| || ||||||||| ||||||||||||||| || Sbjct 10184691 TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 10184632 Query 161262 AGCATACTCTGCTC 161275 ||||| || |||| Sbjct 10184631 TGCATATTCAGCTC 10184618 >seq8 Length=29345952 Score = 111 bits (122), Expect = 2e-19 Identities = 108/137 (79%), Gaps = 3/137 (2%) Strand=Plus/Plus Query 161341 ATGCCTCTGGGCATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 161400 |||||||| | ||||||||||| ||||||| ||| |||| ||||| || ||||||||| Sbjct 6844675 ATGCCTCTAGA-ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAAC 6844733 Query 161401 ATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTC 161460 ||||| ||||||| ||| ||| | || ||||| ||||| || ||||| || || || Sbjct 6844734 ATTCTTATGCACCATTTC--AATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTT 6844791 Query 161461 AGTGCAATGCACGGTTC 161477 ||||| ||||| |||| Sbjct 6844792 AGTGCTATGCATAGTTC 6844808 Score = 102 bits (112), Expect = 9e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 158325 GTGTGAAGACGACCAGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTA 158384 ||| ||||||||| ||| |||| ||||| || |||||||| ||| |||| || || Sbjct 28015313 GTGCGAAGACGACGTCTACGTCCTCGACGCCGCGGAGGAAGCAGGTATCGATCTGCCCTA 28015254 Query 158385 CTCGTGCCGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGA 158444 ||| |||||||| || |||| ||| || || || ||| ||||||||||| | | || Sbjct 28015253 CTCATGCCGTGCGGGATCTTGCTCGAGCTGCGCCGGGAAAGTCGTCTCTGGCTCAATTGA 28015194 Query 158445 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAAT 158480 ||| | |||||| |||| | || |||||||| || Sbjct 28015193 CCAGACGGACCAGAGCTTCTTAGATGATGACCAGAT 28015158 Score = 82.4 bits (90), Expect = 8e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 161713 AACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAAC 161772 ||||| ||||||||||| |||||||| || | ||||||||||| || ||| | || Sbjct 10479929 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTTTTAAT 10479870 Query 161773 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATG 161820 || ||||| || || | ||||||||| ||||| |||||||| ||| Sbjct 10479869 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATG 10479822 >seq17 Length=44223734 Score = 105 bits (116), Expect = 7e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 158325 GTGTGAAGACGACCAGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTA 158384 ||| ||||||||| ||| |||| ||||| || |||||||| ||| |||| | ||| Sbjct 42227458 GTGCGAAGACGACGTCTACGTCCTCGACGCTGCGGAGGAAGCAGGTATCGATTTGCCTTA 42227399 Query 158385 CTCGTGCCGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGA 158444 ||||||||| ||||| |||| || || || || ||| ||||||||||| | | || Sbjct 42227398 CTCGTGCCGCGCAGGATCTTGCTCAAGCTGCGCAGGGAAAGTCGTCTCTGGCTTCATTGA 42227339 Query 158445 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAAT 158480 ||| | |||||| |||| | ||||||||||| || Sbjct 42227338 CCAGACGGACCAGAGCTTCTTAGACGATGACCAGAT 42227303 >seq28 Length=1539140 Score = 102 bits (112), Expect = 9e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 158325 GTGTGAAGACGACCAGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTA 158384 ||| || |||||| ||| |||||||||| ||||||||||| || |||| | ||| Sbjct 841702 GTGCGACGACGACGTCTACGTCCTTGACGCTGCTGAGGAAGCCGGAATCGACTTGCCTTA 841643 Query 158385 CTCGTGCCGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGA 158444 ||| |||||||| || | || ||| ||||| || ||| | || ||||| | || || Sbjct 841642 CTCTTGCCGTGCTGGTTCCTGCTCGAGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTTGA 841583 Query 158445 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTG 158504 ||| |||||| ||||| || |||||||| || | || ||| |||| ||||| Sbjct 841582 CCAGTCTGACCAGAGTTTCCTCGATGATGACCAGATTGCGGAAGGATTCGTTCTCACTTG 841523 Query 158505 TGTTTCTTATCCTACAAGTGATTGTGTGATTGAGACTGACAAGGAAGAGGA 158555 || |||||| ||| ||| | |||||||| ||| ||||| || Sbjct 841522 TGCGGCTTATCTTACTTTCGATGTTACCATTGAGACCCACAGAGAAGATGA 841472 >seq16 Length=18736220 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 158325 GTGTGAAGACGACCAGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTA 158384 ||| || |||||| ||| |||| ||||| ||||||||||| || |||| | ||| Sbjct 7499779 GTGCGACGACGACGTTTACGTCCTCGACGCTGCTGAGGAAGCAGGGATCGACTTGCCTTA 7499838 Query 158385 CTCGTGCCGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGA 158444 ||| |||||||| || |||| ||| || || || ||| | || ||||| | || || Sbjct 7499839 CTCTTGCCGTGCCGGTTCTTGCTCGAGCTGCGCAGGTAAAGTTGTGTCTGGTTCGGTTGA 7499898 Query 158445 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTG 158504 ||| |||||| ||||| || |||||||| || | | || || | || ||||| Sbjct 7499899 CCAGTCTGACCAGAGTTTCCTCGATGATGACCAGATTGCTGAAGGGTTTGTCCTCACTTG 7499958 Query 158505 TGTTTCTTATCCTACAAGTGATTGTGTGATTGAGACTGACAAGGAAGAGGA 158555 || | |||||||| |||| | || ||||| ||| ||||| || Sbjct 7499959 TGCGGCGTATCCTACTTCTGATGTTACCATCGAGACCCACAGAGAAGAAGA 7500009 >seq18 Length=77673080 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 162117 TTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGA 162176 |||||| | | || |||||| | || ||||| ||||||||||| || |||||||| Sbjct 3654925 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 3654984 Query 162177 CTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTC 162236 || | || ||||| ||| ||| | || | ||||||||| | || || || || || Sbjct 3654985 CTATTGCTCTTTCCTTGTGCCTATTTCACTTTGGGGGGTTGGTTCACAGGTACAACCTTT 3655044 Query 162237 GTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGT 162284 || || | ||||||||| ||| | || ||||||||| | || ||| Sbjct 3655045 GTAACTTCATCGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGT 3655092 >seq3071 Length=6037 Score = 82.4 bits (90), Expect = 8e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 161713 AACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAAC 161772 ||||| ||||||||||| |||||||| || | ||||||||||| || ||| | || Sbjct 1741 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTTTTAAT 1682 Query 161773 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATG 161820 || ||||| || || | ||||||||| ||||| |||||||| ||| Sbjct 1681 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATG 1634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547680470697360