Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq14 147 7e-31 seq9 95.1 4e-15 seq8 80.6 8e-11 >seq14 Length=28343526 Score = 147 bits (162), Expect = 7e-31 Identities = 187/255 (73%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 18222 TGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGA 18281 ||||||||| || | || || |||||||| || || ||||| | ||| || || || Sbjct 20845267 TGCATAGCACTAAAAAGAGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGG 20845208 Query 18282 TGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATA 18341 |||||||| || ||||| || | ||||||||| | ||| || ||||||||||| || Sbjct 20845207 TGCATAAGAATGTTGTGCTCAGTTTGGAATACAACCATAAAGTTGAAAGTACCAGAGATT 20845148 Query 18342 CCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATA-AACGAGAAATACTGA 18400 || |||||||||| |||||| ||||| ||||| ||| || | | | ||||| || Sbjct 20845147 CCTAGAGGCATACTATCAGAAAAACTTCCTTGATCAATTGGGCAGATCAAGAAA-ACACC 20845089 Query 18401 GAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCT 18460 | |||| ||| || || | ||||| |||||| |||||| || || ||||| || | Sbjct 20845088 AATAGCAGTTGCAACAGGATCTGAATATGCAACAGCAATCCAAGGACGTATACCCAGACA 20845029 Query 18461 ATAACTAAGTTCCCA 18475 ||||||||||||| Sbjct 20845028 GAAACTAAGTTCCCA 20845014 >seq9 Length=62778564 Score = 95.1 bits (104), Expect = 4e-15 Identities = 259/381 (68%), Gaps = 17/381 (4%) Strand=Plus/Minus Query 18408 GCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTA 18467 |||| || | | || ||||| |||||| |||||| || |||||||| || | ||||| Sbjct 10191037 GCTGGTATTAGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTA 10190978 Query 18468 AGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGT 18527 |||||||| | || ||||| ||| || | || | | |||||| | ||||| ||| Sbjct 10190977 AGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGT 10190918 Query 18528 TGATATG-GTCCTCCGTTATATAACCA-CTCGTCGAGGGTTGCAGCTTCCCAGATTGGGT 18585 | ||| | || | || |||| ||| || || | || |||||||| |||||| | || Sbjct 10190917 TCATAAGCAACCACGTTTGTATAGCCATTTCATCAACGGATGCAGCTT-CCAGATGGCGT 10190859 Query 18586 AGAAGTGAAGACC-GATTG-CGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTT 18643 | || || | ||| || | | | ||| | | | ||| || || | || ||||| Sbjct 10190858 AAAAATGCAAACCACATAGCCCTGAGACAGTAGAAATAATGCACCGGAACTAATATTGTT 10190799 Query 18644 T--CCATAGAGTAAGGCTCCTG-AGACAGGCTCACGAATACCATCTATGTCAACGGGAGG 18700 | || || || ||| || | | ||||| |||| ||||| || || || || |||| Sbjct 10190798 TCACCTTAAAG-AAGAGACCAGAAAACAGGTTCAC-AATACACTCAATATCTACTAGAGG 10190741 Query 18701 -AGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAA--AAGTGCAGGGATCAT 18757 |||||||| ||| ||| |||| | | || ||||| || ||| | ||||||||| Sbjct 10190740 AAGCAGCAATGAATCTAATAAAAA---CGGAAGTAGCGGTCAATTAAG-GTAGGGATCAT 10190685 Query 18758 AAGTACCCCAAACCACCCCAC 18778 | || |||||||| || || Sbjct 10190684 CAAAACACCAAACCATCCAAC 10190664 >seq8 Length=29345952 Score = 80.6 bits (88), Expect = 8e-11 Identities = 100/133 (75%), Gaps = 3/133 (2%) Strand=Plus/Minus Query 18222 TGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGA 18281 ||||||||| |||| | || |||||||| || || ||||| | ||| || || || Sbjct 6844802 TGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACACCTAACAT-TGAAATGG- 6844745 Query 18282 TGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATA 18341 |||||||| || ||||| || || |||||||| | ||| || ||||||||||| || Sbjct 6844744 TGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGAT- 6844686 Query 18342 CCAAGAGGCATAC 18354 | |||||||||| Sbjct 6844685 TCTAGAGGCATAC 6844673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151300887354124