Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq9 260 2e-64 seq14 159 4e-34 seq60 100 4e-16 seq3 82.4 1e-10 >seq9 Length=62778564 Score = 260 bits (288), Expect = 2e-64 Identities = 443/638 (69%), Gaps = 7/638 (1%) Strand=Plus/Plus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTG---A 101766 |||| | | || | ||| || ||||| |||| |||| || ||||||||| || || | Sbjct 56234314 AGAGTGCTTCCACGTGGTAAAACCTCCTCAGTGAATATAATGTTTTCATGAGGCTGCTGA 56234373 Query 101767 TCGACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAAC 101826 || | |||| ||| | || | |||||| || || || || || || || ||||| Sbjct 56234374 TCCTGAGCCGCCATCCAAGTGCGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGAAA 56234433 Query 101827 GTCTCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGA 101886 || || || || |||||||| ||||| | || |||||||| | ||| |||| |||| Sbjct 56234434 GTTTC-AAGTCCGGATCTTCCGCTGCACAAATTTCTTGGGAAATGAAGCCATAGGCACAT 56234492 Query 101887 AGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACA 101946 ||||| | ||| ||||| | || | | | ||| ||| | ||| | || || ||| Sbjct 56234493 AGGTTCAAAGCTAGACCTACTATTACAAGAGCACTCATCCTTAAACCAGTTACTGGTACA 56234552 Query 101947 AAGAGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGAC 102006 || | ||||||||| || ||||| ||||| ||| ||| ||||||||| | ||| Sbjct 56234553 AATAACATAAAGAATTGTAACCAATGTTTATTGGAAAAAGCAGCCCCAAAGATTCGTGAC 56234612 Query 102007 CAGAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCT 102066 || || ||||| || || |||||||||||||| ||||| |||| | | | || || Sbjct 56234613 CAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAATTGGGTTAAAAGCA 56234672 Query 102067 TTGAAAGTGTTTGCTTGATCACCATCTTC--ATACAGAGTGTTCTCCACAGTGACACCGT 102124 || | ||||| |||||||| ||| ||| | | | || || ||||| |||| | Sbjct 56234673 CATAATTTATTTGCACCATCACCATTTTCAGATAAAAAATATT-TCTACAGTAGCACCAT 56234731 Query 102125 GGATTGCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGT 102184 || || | | ||| || | || || | ||| |||| ||||||| ||| |||| | Sbjct 56234732 CAATAGCGCATAACAGAGCCGCGCCAAGTACACCGGCAATTCCCATCAAATGAAATGAAT 56234791 Query 102185 TGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACAC 102244 | || | ||| ||||| || || || | ||||| | ||||| |||||| || || |||| Sbjct 56234792 TCAGTGCCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCCGCTACAC 56234851 Query 102245 CAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGA 102304 |||| ||| ||||||||||| || || || || ||||| || ||||| || | Sbjct 56234852 CAAAACTAGGCACAAAGAACCAATCAGATTGACCTAGTGGATAAATTAGAAAGACTGAAA 56234911 Query 102305 CAAAAACAGCGATAGGCCCAGAGAACGCAATAGCATTG 102342 |||||||||| || || |||||||| | || | |||| Sbjct 56234912 CAAAAACAGCAATTGGACCAGAGAATGTGATTGTATTG 56234949 >seq14 Length=28343526 Score = 159 bits (176), Expect = 4e-34 Identities = 204/281 (73%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 103550 ACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGAAGACTCCAGCAACGCCCAGC 103609 || || |||| ||||||||||| || || || || ||||| || ||||| || || | | Sbjct 20845279 ACCAGGGAACTATGCATAGCACTAAAAAGAGAGCCGCCGAATACACCAGCTACACCTAAC 20845220 Query 103610 ATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGACCAGCATGTAGTTGAAG 103669 ||||| || |||||||| |||||||| || || | |||||| || | ||| ||||||| Sbjct 20845219 ATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGTTTGGAATACAACCATAAAGTTGAAA 20845160 Query 103670 GTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTGACCAAAGGGGTAGACC 103729 || || || || || | ||||||| ||| || || |||||| ||| ||| ||| | Sbjct 20845159 GTACCAGAGATTCCTAGAGGCATACTATCAGAAAAACTTCCTTGATCAATTGGGCAGATC 20845100 Query 103730 AAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCGACACAGATCCAGGGGCGC 103789 ||||| || | |||| ||||||||| | || ||||| ||| ||||| || || Sbjct 20845099 AAGAAAACACCAATAGCAGTTGCAACAGGATCTGAATATGCAACAGCAATCCAAGGACGT 20845040 Query 103790 ATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATA 103830 || ||||||| | | | ||||||||||| ||||||| Sbjct 20845039 ATACCCAGACAGAAACTAAGTTCCCACTCACAATCCATATA 20844999 >seq60 Length=523306 Score = 100 bits (110), Expect = 4e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 102280 AGAGGATAGATGAGAAACACACTGACAAAAACAGCGATAGGCCCAGAGAACGCAATAGCA 102339 |||||||| || ||||| || ||||||||| | || | ||| |||| |||| ||| Sbjct 21736 AGAGGATAAATTAGAAAGACGGAAACAAAAACATCAATTAGACCAAAGAATGCAACTGCA 21677 Query 102340 TTGTACGGACGAATTCCAATTAACCTAGCCAACTCGAATTGACGAAGCATGAAACCAATG 102399 || || || || | | || | | ||| | || |||| | | | ||| ||||| || Sbjct 21676 TTATAAGGTCGCAATTGAACAGATCGAGCAAGTTCAAATTAATGCAACATAAAACCTATT 21617 Query 102400 AGGGCAAATGCACCGTGGAGAGCCACAAAAGCCCAGAGTCCCCCAAGTTGGACCCACCTG 102459 | | || |||| ||||||||| ||||||||||| | || || ||||| ||| | Sbjct 21616 AATGTGAAAGCACAGTGGAGAGCAACAAAAGCCCACATACCGCCTAGTTGACACCAACGA 21557 Query 102460 ACGAAATCTCCTTGAGCTTCAGGACCCCAAAGT 102492 ||||||||||| ||||||||| |||| ||| Sbjct 21556 GTAAAATCTCCTTGTGCTTCAGGATCCCACAGT 21524 >seq3 Length=43957692 Score = 82.4 bits (90), Expect = 1e-10 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 102824 GGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCATCCAGAAAGGAT 102883 ||||| ||||| || |||| ||| ||||| || | ||||| || || ||||| || Sbjct 14188181 GGGTAAGCCACACAAGTCAAGACATAACCTTTCTCCATGTGATCATCCTCAAGAAACGAA 14188122 Query 102884 TGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAGAACACGCACCA 102943 ||| || || || || || || |||||||| || || |||||||||||| Sbjct 14188121 CCATCAGACTGGTCAACTTGGCCTCTCTCGATATTACCAGCGCAGGTGGAACACGCACCA 14188062 Query 102944 GCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTAGAATATATTGA 103003 || | || || ||||||| ||||| |||||||| ||||| || || | || || || Sbjct 14188061 GCTCTGCAAGAGTAAGGCAAGTCAACTCCTGCTTCTTCAGCCGCATCCAATATGTACTGG 14188002 Query 103004 TCATC 103008 || || Sbjct 14188001 TCGTC 14187997 Score = 82.4 bits (90), Expect = 1e-10 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 102824 GGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCATCCAGAAAGGAT 102883 ||||| ||||| || |||| ||| ||||| |||| |||| || || ||||| || Sbjct 15774001 GGGTAAGCCACACAAGTCAAGACATAACCTTTCTCTATGTGATGATCTTCAAGAAACGAA 15773942 Query 102884 TGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAGAACACGCACCA 102943 ||| || || || || || |||||||| || || || ||||||||||| Sbjct 15773941 CCATCAGACTGGTCAACTTGGCCTTTCTCGATCTTACCGGCGCAGGTGGAACACGCACCG 15773882 Query 102944 GCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTAGAATATATTGA 103003 || | || || ||||||| |||||||||||||| ||||| || || | || || || Sbjct 15773881 GCTCTGCAAGAGTAAGGCAAGTCAACACCTGCTTCTTCAGCCGCATCCAATATGTACTGG 15773822 Query 103004 TCATC 103008 || || Sbjct 15773821 TCGTC 15773817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633436422205680