Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq14 136 1e-27 seq8 80.6 8e-11 >seq14 Length=28343526 Score = 136 bits (150), Expect = 1e-27 Identities = 203/287 (71%), Gaps = 1/287 (0%) Strand=Plus/Minus Query 21846 ACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACACCCAGC 21905 |||||| || ||||||||| || | | || || ||||| || || ||||| | | Sbjct 20845279 ACCAGGGAACTATGCATAGCACTAAAAAGAGAGCCGCCGAATACACCAGCTACACCTAAC 20845220 Query 21906 ATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAG 21965 |||||||| || ||||||||||| |||||||||| ||||| || | ||| ||||||| Sbjct 20845219 ATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGTTTGGAATACAACCATAAAGTTGAAA 20845160 Query 21966 GTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACA 22025 || || || || || | |||||| |||||||||| || || ||| || | | Sbjct 20845159 GTACCAGAGATTCCTAGAGGCATACTATCAGAAAAACTTCCTTGATCAATTGGGCAGATC 20845100 Query 22026 AGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTC 22085 | ||| ||| || | |||| || |||||| | || || |||||| ||||| || | Sbjct 20845099 AAGAAAACACCAATAGCAGTTGCAACAGGATCTGAATATGCAACAGCAATCCAAGGACGT 20845040 Query 22086 ATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAA 22132 || || || | | |||||||||||||| | |||| ||| |||| Sbjct 20845039 ATACCCAGACAGAAACTAAGTTCCCACTCACAATCCATATAA-CAAA 20844994 >seq8 Length=29345952 Score = 80.6 bits (88), Expect = 8e-11 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 21879 CCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCA 21938 || || ||||| || || ||||| | ||| ||||| || ||||||||||| ||||||||| Sbjct 6844781 CCGCCGAATACACCAGCTACACCTAACAT-TGAAATGG-TGCATAAGAATGTTGTGCTCA 6844724 Query 21939 GCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATAT 21976 |||||||| || | ||| ||||||| || || || || Sbjct 6844723 GCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGAT 6844686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146191078799880