Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq8 95.1 6e-15 >seq8 Length=29345952 Score = 95.1 bits (104), Expect = 6e-15 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 |||| ||||| || ||||| ||||| || ||||| | ||||| ||||||||||| || Sbjct 19410905 TACCCTTTCTCTTGCCTCCTCCTTGGTCAACGTAGCGAGCAGTATCATTGAAAACACGCA 19410964 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 |||||||| | ||| | || ||| || |||| | |||| | |||||||| | Sbjct 19410965 GCATTGGAAGAATACCATTAGATGTTCCATTCGTGCCACGAATGTAACTTCCTGTCGCAC 19411024 Query 26184 TAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTG 26243 || | |||| | || ||| || || ||||| |||| ||| ||||||| || Sbjct 19411025 GGATGTTGTGAACTGAAACACCAATACCCCCAGCTGATTTACTTATAACTGCACACTCCT 19411084 Query 26244 AAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 | |||||| ||||||| | |||||||| | ||||| Sbjct 19411085 TCAATGTATCATAAATTCCCTCAATGCTATCGTCCTTCAT 19411124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253009944066950