Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq14 154 2e-32 seq9 143 3e-29 seq8 104 3e-17 seq18 96.9 4e-15 seq12 93.3 5e-14 seq4 89.7 6e-13 seq1 89.7 6e-13 >seq14 Length=28343526 Score = 154 bits (170), Expect = 2e-32 Identities = 195/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 124424 ACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATTCCTGCTACTCCTGCC 124483 || || |||| |||||| || || | ||| || ||||| | || ||||| ||| | Sbjct 20845279 ACCAGGGAACTATGCATAGCACTAAAAAGAGAGCCGCCGAATACACCAGCTACACCTAAC 20845220 Query 124484 ATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGAACATAAAGTTGAAA 124543 ||||| || || ||||| |||||||| ||||| | |||||| || | ||||||||||||| Sbjct 20845219 ATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGTTTGGAATACAACCATAAAGTTGAAA 20845160 Query 124544 GTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGACCAAATGGGTATACT 124603 ||||| ||||| || || ||||||| |||||| || || ||| ||| |||| | | Sbjct 20845159 GTACCAGAGATTCCTAGAGGCATACTATCAGAAAAACTTCCTTGATCAATTGGGCAGATC 20845100 Query 124604 AAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACACAGATCCAAGGACGC 124663 ||||| ||| | | |||| | || || ||||||| |||||| ||||||||||| Sbjct 20845099 AAGAAAACACCAATAGCAGTTGCAACAGGATCTGAATATGCAACAGCAATCCAAGGACGT 20845040 Query 124664 ATTCCTAATCTGTATGATAGTTCCCACT 124691 || || | | | | |||||||||| Sbjct 20845039 ATACCCAGACAGAAACTAAGTTCCCACT 20845012 >seq9 Length=62778564 Score = 143 bits (158), Expect = 3e-29 Identities = 403/617 (65%), Gaps = 24/617 (4%) Strand=Plus/Plus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| | | | || | |||||| || || || | ||||| || || ||||| || || Sbjct 56234310 TTAAAGAGTGCTTCCACGTGGTAAAACCTCCTCAGTGAATATAATGTTTTCATGAGGCTG 56234369 Query 122926 GTCAAC---AGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATA 122982 | | | || | |||||| | | || ||||| || | |||||| || || ||||| Sbjct 56234370 CTGATCCTGAGCCGCCATCCAAGTGCGAATACCTTCGTTTAAAAGAATATTTTTAGTATA 56234429 Query 122983 GAAAGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGC 123042 |||||| || || || || ||||| ||||| | || ||||| || | ||| | || || Sbjct 56234430 GAAAGTTTC-AAGTCCGGATCTTCCGCTGCACAAATTTCTTGGGAAATGAAGCCATAGGC 56234488 Query 123043 TCTGAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGG 123102 | ||||| | ||||||||||| || | | || ||| | ||| | || || Sbjct 56234489 ACATAGGTTCAAAGCTAGACCTACTATTACAAGAGCACTCATCCTTAAACCAGTTACTGG 56234548 Query 123103 AACGAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTG 123162 || || ||||||| ||| ||||| | ||| || ||||| || ||||| || | Sbjct 56234549 TACAAATAACATAAAGAATTGTAACCAATGTTTATTGGAAAAAGCAGCCCCAAAGATTCG 56234608 Query 123163 TGACCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAA 123222 |||||| || | ||| || || | ||| |||||||||||| | || | || | || Sbjct 56234609 TGACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAATTGGGTTAAA 56234668 Query 123223 TGCTCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAA 123282 || | | ||| | | ||| ||| || || ||| | | || Sbjct 56234669 AGCACATA---------ATTTATTTGCACCATCACCATTTTCAGAT--------AAAAAA 56234711 Query 123283 TGTGTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGC 123342 | | |||| || || ||||||| ||| || |||| | || | || |||| || || Sbjct 56234712 TAT-TTCT--ACAGTAGCACCATCAATAGCGCATAACAGAGCCGCGCCAAGTACACCGGC 56234768 Query 123343 AACACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGAT 123402 || ||||||| ||||||| ||||| || || || || ||||| | || | ||| Sbjct 56234769 AATTCCCATCAAATGAAATGAATTCAGTGCCCAATTATGAAACCCTTGGAAAAAGAGGAT 56234828 Query 123403 ATAACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAG 123462 | ||||| || || || ||||| || || | ||||||||| |||||||| Sbjct 56234829 GAATCGAAATATAGCCGCTACACCAAAACTAGGCACAAAGAACCAATCAGATTGACCTAG 56234888 Query 123463 TGGATAGATCAGAAAGA 123479 |||||| || ||||||| Sbjct 56234889 TGGATAAATTAGAAAGA 56234905 >seq8 Length=29345952 Score = 104 bits (114), Expect = 3e-17 Identities = 129/173 (75%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 124396 TGTTGTTTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGA 124455 ||| ||||| |||||| | ||| || ||| ||||| |||||| || |||| || Sbjct 6844841 TGTGGTTTCCCTGATTCAACTAGAAGTTCCAA-AGAACTATGCATAGCACTAAATAGGGA 6844783 Query 124456 TCCTCCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTC 124515 || ||||| | || ||||| ||| ||| |||| | ||||| |||||||| ||||| Sbjct 6844782 GCCGCCGAATACACCAGCTACACCTAACATT--GAAATGGTGCATAAGAATGTTGTGCTC 6844725 Query 124516 TGCTTGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATAC 124568 || ||||| || | |||||||||||||||||| ||||| | || ||||||| Sbjct 6844724 AGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGAT-TCTAGAGGCATAC 6844673 >seq18 Length=77673080 Score = 96.9 bits (106), Expect = 4e-15 Identities = 111/148 (75%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 123756 CAATACCATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTG 123815 |||| ||||| |||||| |||| || || ||||| || ||| ||||||||| || | | Sbjct 3655071 CAAT-CCATGAGTATACGATGAAGTTACAAAGGTTGTACCTGTGAACCAACCCCCCAAAG 3655013 Query 123816 ATAGATACGCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTC 123875 | ||| |||||||| | || || ||||||||||| |||| || || || || || | Sbjct 3655012 TGAAATAGGCACAAGGAAAGAGCAATAGACCAGACCAACCTACAAAAACGAAGCGGTCCC 3654953 Query 123876 TCTTTAACCAGTCGTCAAGAACATCAAA 123903 || ||||||||| || | || |||||| Sbjct 3654952 TCCGTAACCAGTCATCCATAATATCAAA 3654925 >seq12 Length=60369500 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 138161 AAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATG 138220 |||||||| ||||| || |||||||| ||||| | ||||| || ||||||||||| Sbjct 58511432 AAATGGTGCTAGATGCTTCTTCACACCAATGGGACCCATTCCAGGCCCACCACCTCCATG 58511491 Query 138221 TGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCA 138269 ||||||||||| ||||| || | ||| ||||| || ||||| || ||| Sbjct 58511492 AGGAATACAGAAGGTCTTGTGGAGATTGAGATGGCACACATCCGCTCCA 58511540 >seq4 Length=33175494 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 138161 AAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATG 138220 |||||||| | ||| || |||||||| ||||| | ||||| || ||||||||||| Sbjct 21857635 AAATGGTGCTAAATGCTTCTTCACACCAATGGGACCCATTCCAGGCCCACCACCTCCATG 21857694 Query 138221 TGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCA 138269 ||||||||||| ||||| || | ||| ||||| || ||||| || ||| Sbjct 21857695 AGGAATACAGAAGGTCTTGTGGAGATTGAGATGGCACACATCCGCTCCA 21857743 >seq1 Length=45320942 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 138161 AAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATG 138220 |||||||| | ||| || |||||||| ||||| | ||||| || ||||||||||| Sbjct 10306479 AAATGGTGCTAAATGCTTCTTCACACCAATGGGACCCATTCCAGGCCCACCACCTCCATG 10306420 Query 138221 TGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCA 138269 ||||||||||| ||||| || | ||| ||||| || ||||| || ||| Sbjct 10306419 AGGAATACAGAAGGTCTTGTGGAGATTGAGATGGCACACATCCGCTCCA 10306371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578927863519920