Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq14 143 3e-29 seq8 120 4e-22 >seq14 Length=28343526 Score = 143 bits (158), Expect = 3e-29 Identities = 175/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 8272 GAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGG 8331 |||| ||||||||||| || || || || ||||| | ||| ||||| ||| ||| || Sbjct 20845273 GAACTATGCATAGCACTAAAAAGAGAGCCGCCGAATACACCAGCTACACCTAACATGTGA 20845214 Query 8332 AAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCA 8391 || || |||||||||||||| ||||| | ||||||||| | ||| ||||| || |||||| Sbjct 20845213 AATGGGTGCATAAGAATGTTGTGCTCAGTTTGGAATACAACCATAAAGTTGAAAGTACCA 20845154 Query 8392 GAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAAC 8451 || || ||||||||||| | |||||| || || ||| ||| ||| | | ||||| Sbjct 20845153 GAGATTCCTAGAGGCATACTATCAGAAAAACTTCCTTGATCAATTGGGCAGATCAAGAAA 20845094 Query 8452 ACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTCATACC 8510 || | | ||||| | || ||| | |||||| ||| ||||| || | ||||| Sbjct 20845093 ACACCAATAGCAGTTGCAACAGGATCTGAATATGCAACAGCAATCCAAGGACGTATACC 20845035 >seq8 Length=29345952 Score = 120 bits (132), Expect = 4e-22 Identities = 138/182 (76%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 8227 GACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCA 8286 || || |||| || || || |||||| | ||| || | ||||||| ||||||||| Sbjct 6844852 GATTCATCTTTTGTGGTTTCCCTGATTCAACTAGAAGTTCC-AAAGAACTATGCATAGCA 6844794 Query 8287 CTGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGA 8346 || || || || || ||||| | ||| ||||| ||| ||| |||| | ||||||||| Sbjct 6844793 CTAAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATT--GAAATGGTGCATAAGA 6844736 Query 8347 ATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGC 8406 ||||| ||||| || |||||||| | ||| ||||| || |||||||| || |||||||| Sbjct 6844735 ATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGAT-TCTAGAGGC 6844677 Query 8407 AT 8408 || Sbjct 6844676 AT 6844675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615787372563120