Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq9 262 4e-65 seq14 170 2e-37 seq3071 96.9 4e-15 seq8 96.9 4e-15 seq60 84.2 2e-11 >seq9 Length=62778564 Score = 262 bits (290), Expect = 4e-65 Identities = 446/642 (69%), Gaps = 7/642 (1%) Strand=Plus/Minus Query 167394 CAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGCGTTTTCCTTCTCTATCC 167453 |||| | || | ||||||||||| |||||||| || ||| || || || | ||||| Sbjct 56234949 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 56234890 Query 167454 CCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCTTCGGAGTCGCCGCCATCTTCCGATT 167513 || |||||| |||||||||| || || || || || || || || ||||| Sbjct 56234889 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 56234830 Query 167514 CCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGT 167573 | ||||||| ||||||| || || || ||| |||||||| |||||||| ||||||| | Sbjct 56234829 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGATGGGAAT 56234770 Query 167574 AGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATAC 167633 || ||| | || || | || || | | || || |||||| ||| ||||| |||| Sbjct 56234769 TGCCGGTGTACTTGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGA-AATAT 56234711 Query 167634 TTTGTA--TGAAGATGGTGAGCAAGCAAACACTTTTAAGGCATTCGATTCTACTCAGGAA 167691 ||| || |||| ||||||| ||||| | || || || | | | ||| | Sbjct 56234710 TTTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCC 56234651 Query 167692 GAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGGTCTCAGATCTTCGGCATTGCT 167751 ||||| |||||||||||||| || || ||||| || ||||| | ||||| || |||| Sbjct 56234650 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCT 56234591 Query 167752 TTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTATTCGTTCCCGTTATGGGACTTTGG 167811 || ||| |||| ||| | || |||||||||||||| || || || | || | || Sbjct 56234590 TTTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGG 56234531 Query 167812 ACATCATCGATTGGCATCATTGGTCTGGCTCTTAATCTTCGTGCTTACGATTTCGTTTCT 167871 | | ||| || | ||||| ||| | || || |||| || | ||| |||| Sbjct 56234530 ATGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCC 56234471 Query 167872 CAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAAACTTTCTATACTAAAAACATCCTT 167931 ||||| || | || ||||| ||||| || |||||||||||||||||||||| || ||| Sbjct 56234470 CAAGAAATTTGTGCAGCGGAAGATCCGGA-CTTGAAACTTTCTATACTAAAAATATTCTT 56234412 Query 167932 CTGAATGAAGGTCTTCGAGCATGGTTAGCACCTATCGAT---CAACCTCATGAGAACTTT 167988 | || |||||| |||| | ||| | || || ||| || |||||||| ||| || Sbjct 56234411 TTAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATT 56234352 Query 167989 GTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGCACTATAA 168030 | ||| | ||||| ||| | ||||| || | | | || ||| Sbjct 56234351 ATATTCACTGAGGAGGTTTTACCACGTGGAAGCACTCTTTAA 56234310 Score = 102 bits (112), Expect = 9e-17 Identities = 211/301 (70%), Gaps = 11/301 (4%) Strand=Plus/Plus Query 165874 TTCATCGCTGCTCCCCCT-GTGGACATCGACGGCATCCGTGAACCCGTCG-CTGGTTCTC 165931 ||||| |||||| || || || || || || | || ||||||| || ||||| ||| Sbjct 10190728 TTCATTGCTGCTTCCTCTAGTAGATATTGAGTGTATT-GTGAACCTGTTTTCTGGT-CTC 10190785 Query 165932 TGATGTATGGT--AACAACATCATCTCTGGTGCAGTTGTTCC-CTCTTCCAACGCAAT-T 165987 | | || ||| ||||| || | || |||||| | ||| || | || || || | Sbjct 10190786 TTCTTTAAGGTGAAACAATATTAGTTCCGGTGCATTATTTCTACTGTCTCAGGGCTATGT 10190845 Query 165988 GGTCTACACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAA-TGGCTCTATAACGG 166046 ||| | || || || |||||||| |||| ||||| |||| ||| ||||| || || | Sbjct 10190846 GGTTTGCATTTTTACGCCATCTGG-AAGCTGCATCCGTTGATGAAATGGCTATACAAACG 10190904 Query 166047 TGGTC-CTTTCCAACTGGTTGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTC 166105 |||| ||| |||| |||| | ||||| | |||| | | || ||||||| Sbjct 10190905 TGGTTGCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTC 10190964 Query 166106 GTGAGTGGGAACTGTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAG 166165 ||||||||||||| || |||||| ||||||||||| ||||| |||||| || |||| Sbjct 10190965 GTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAG 10191024 Query 166166 C 166166 | Sbjct 10191025 C 10191025 >seq14 Length=28343526 Score = 170 bits (188), Expect = 2e-37 Identities = 199/269 (74%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 166096 TACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTT 166155 || |||| | ||||||||||||| || | |||| ||||| ||||| ||||| |||| Sbjct 20844999 TATATGGATTGTGAGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATTGCTGTT 20845058 Query 166156 GCTTACTCAGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTAGTATATCCTTTCGGTCAA 166215 || || |||| || || || |||| | || || ||| | | | || | | |||| Sbjct 20845059 GCATATTCAGATCCTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATTGATCAA 20845118 Query 166216 GGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTC 166275 || ||||| |||||| ||||| || |||||||| || || ||||||| ||| | || Sbjct 20845119 GGAAGTTTTTCTGATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTA 20845178 Query 166276 TTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTA 166335 |||||| |||||||||| ||||| ||||| || || || ||| | || || ||||| ||| Sbjct 20845179 TTCCAAACTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 20845238 Query 166336 TTTGGTGGCAGTTTGTTTAGTGCTATGCA 166364 || || ||| | | |||||||||||||| Sbjct 20845239 TTCGGCGGCTCTCTTTTTAGTGCTATGCA 20845267 >seq3071 Length=6037 Score = 96.9 bits (106), Expect = 4e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 166606 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 166665 ||||| || |||||||| |||||||| || | ||||| |||| || ||||| || || Sbjct 1741 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTTTTAAT 1682 Query 166666 ACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGA 166718 || ||||| ||| || ||||||| ||| || ||||||||||||||| |||| Sbjct 1681 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGTATGA 1629 >seq8 Length=29345952 Score = 96.9 bits (106), Expect = 4e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 166606 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 166665 ||||| || |||||||| |||||||| || | ||||| |||| || ||||| || || Sbjct 10479929 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTTTTAAT 10479870 Query 166666 ACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGA 166718 || ||||| ||| || ||||||| ||| || ||||||||||||||| |||| Sbjct 10479869 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGTATGA 10479817 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/131 (77%), Gaps = 3/131 (2%) Strand=Plus/Plus Query 166234 ATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAAT 166293 ||||| || | |||||| || || ||||||| ||| | || ||||| ||||||||||| Sbjct 6844675 ATGCCTCTAG-AATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAAC 6844733 Query 166294 ATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTT 166353 ||||| ||||| || || || ||| | || || ||||| ||||| || ||| | ||| Sbjct 6844734 ATTCTTATGCA-CCATTTCA-ATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTT 6844791 Query 166354 AGTGCTATGCA 166364 ||||||||||| Sbjct 6844792 AGTGCTATGCA 6844802 >seq60 Length=523306 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 167245 CTATGGGGTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGG 167304 || |||| ||||||| | ||||| ||||| | ||| ||||| || || | ||| Sbjct 21525 CTGTGGGATCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAACTAGGCGGTATGTGG 21584 Query 167305 GCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAA 167364 |||||||| || |||||| | || || | | || ||||| ||| | | | |||||| Sbjct 21585 GCTTTTGTTGCTCTCCACTGTGCTTTCACATTAATAGGTTTTATGTTGCATTAATTTGAA 21644 Query 167365 CTTGCTCG-CCTGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGC 167423 |||||||| ||| || | || || || ||||| |||| |||| ||||| |||| Sbjct 21645 CTTGCTCGATCTG-TTCAATTGCGACCTTATAATGCAGTTGCATTCTTTGGTCTAATTGA 21703 Query 167424 TGTCTTCGTTAGCGTTTTCCTTCTCTATCCCCT 167456 ||| || ||| ||| || || | ||||| || Sbjct 21704 TGTTTTTGTTTCCGTCTTTCTAATTTATCCTCT 21736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561179625962400