Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq14 136 1e-27 seq8 80.6 8e-11 >seq14 Length=28343526 Score = 136 bits (150), Expect = 1e-27 Identities = 203/287 (71%), Gaps = 1/287 (0%) Strand=Plus/Plus Query 41555 TTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATC 41614 |||| ||| |||| | |||||||||||||| | | || || || | || ||||| Sbjct 20844994 TTTG-TTATATGGATTGTGAGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATT 20845052 Query 41615 TTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTT 41674 |||||| || || | |||||| || |||| | || ||| ||| | | | || || Sbjct 20845053 GCTGTTGCATATTCAGATCCTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATT 20845112 Query 41675 GGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATG 41734 | || || |||||||||| |||||| | || || || || || ||||||| ||| Sbjct 20845113 GATCAAGGAAGTTTTTCTGATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATG 20845172 Query 41735 CTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCC 41794 | || ||||| |||||||||| ||||||||||| || ||||||||| | ||||| || Sbjct 20845173 GTTGTATTCCAAACTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCT 20845232 Query 41795 GGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGT 41841 || ||||| || || | | || ||||||||| || |||||| Sbjct 20845233 GGTGTATTCGGCGGCTCTCTTTTTAGTGCTATGCATAGTTCCCTGGT 20845279 >seq8 Length=29345952 Score = 80.6 bits (88), Expect = 8e-11 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 41711 ATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCAT 41770 || || || || ||||||| ||| | || ||||||||||||||||| ||||||||||| Sbjct 6844686 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCA- 6844744 Query 41771 CCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGG 41808 || ||||| ||| | ||||| || || ||||| || || Sbjct 6844745 CCATTTCA-ATGTTAGGTGTAGCTGGTGTATTCGGCGG 6844781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146197478059184