Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq14 123 7e-24 seq8 89.7 1e-13 >seq14 Length=28343526 Score = 123 bits (136), Expect = 7e-24 Identities = 184/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 42628 GAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCC 42687 || ||||||||| | | | || || || | || ||||| |||||| || || | Sbjct 20845011 GAGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATTGCTGTTGCATATTCAGAT 20845070 Query 42688 CCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCA 42747 ||||| || | || | || || ||| | ||| ||| ||| ||||| |||||| Sbjct 20845071 CCTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATTGATCAAGGAAGTTTTTCT 20845130 Query 42748 GATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAA 42807 ||| | |||||||| || || || ||||| |||||||| ||| | || ||||| |||| Sbjct 20845131 GATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTCCAAACTGAG 20845190 Query 42808 CATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCG 42867 || |||||||||||||| || || || ||| | ||||| || || ||||| || || || Sbjct 20845191 CACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCT 20845250 Query 42868 TTGTTCTCAGCTATGCATGGT 42888 | || ||||||||| || Sbjct 20845251 CTTTTTAGTGCTATGCATAGT 20845271 >seq8 Length=29345952 Score = 89.7 bits (98), Expect = 1e-13 Identities = 102/135 (76%), Gaps = 3/135 (2%) Strand=Plus/Plus Query 42754 ATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAAC 42813 |||||||| | || || ||||| |||||||| ||| | || ||||||||||| || ||| Sbjct 6844675 ATGCCTCTAGA-ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAAC 6844733 Query 42814 ATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTC 42873 ||||||||||| | |||| ||| | ||||| || || ||||| || || || | || Sbjct 6844734 ATTCTTATGCACCATTTC--AATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTT 6844791 Query 42874 TCAGCTATGCATGGT 42888 ||||||||| || Sbjct 6844792 AGTGCTATGCATAGT 6844806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143516188410808