Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq14 141 3e-29 seq8 91.5 4e-14 >seq14 Length=28343526 Score = 141 bits (156), Expect = 3e-29 Identities = 185/256 (72%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 26264 TGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAATGGG 26323 ||||||||| ||||||| || ||||| || ||||| ||||| ||| || |||||| Sbjct 20845267 TGCATAGCACTAAAAAGAGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGG 20845208 Query 26324 TGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATA 26383 ||||| || || || || || | ||||||||| | ||||||||| |||||||||||||| Sbjct 20845207 TGCATAAGAATGTTGTGCTCAGTTTGGAATACAACCATAAAGTTGAAAGTACCAGAGATT 20845148 Query 26384 CCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCG 26443 || |||||||| | |||| |||||| ||||| | | || | | ||||| || | Sbjct 20845147 CCTAGAGGCATACTATCAGAAAAACTTCCTTGATCAATTGGGCAGATCAAGAAAACACCA 20845088 Query 26444 AGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTG 26503 | ||| | | | || ||| |||||||||| ||||| || | || || || | | Sbjct 20845087 ATAGCAGTTGCAACAGGATCTGAATATGCAACAGCAATCCAAGGACGTATACCCAGACAG 20845028 Query 26504 TAAGATAGTTCCCACT 26519 || |||||||||| Sbjct 20845027 AAACTAAGTTCCCACT 20845012 >seq8 Length=29345952 Score = 91.5 bits (100), Expect = 4e-14 Identities = 101/131 (77%), Gaps = 3/131 (2%) Strand=Plus/Minus Query 26264 TGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAATGGG 26323 ||||||||| || || | || ||||| || ||||| ||||| ||| || ||||| Sbjct 6844802 TGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACACCTAACAT-TGAAATGG- 6844745 Query 26324 TGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATA 26383 ||||| || || || || || || |||||||| | ||||||||| |||||||||||||| Sbjct 6844744 TGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGAT- 6844686 Query 26384 CCAAGAGGCAT 26394 | |||||||| Sbjct 6844685 TCTAGAGGCAT 6844675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147694904736320