Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq14 174 2e-38 seq8 102 1e-16 >seq14 Length=28343526 Score = 174 bits (192), Expect = 2e-38 Identities = 201/271 (74%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 155306 GTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTG 155365 || ||||||||||| || | |||| || || ||||||||||| ||||||||| || | Sbjct 20845009 GTGAGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATTGCTGTTGCATATTCAG 20845068 Query 155366 CACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCT 155425 || || | |||| | | ||| ||| | | | || | | |||||| ||| | Sbjct 20845069 ATCCTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATTGATCAAGGAAGTTTTT 20845128 Query 155426 CTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAG 155485 ||||| |||||||| || |||||||||||||| |||| |||| | || |||||| | | Sbjct 20845129 CTGATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTCCAAACTG 20845188 Query 155486 AACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGAT 155545 | ||||| || ||||||||||| || |||||| | || ||||| ||||| ||||| || | Sbjct 20845189 AGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCT 20845248 Query 155546 CTCTTTTCTCTGCTATGCACGGTTCATTGGT 155576 ||||||| ||||||||| |||| |||| Sbjct 20845249 CTCTTTTTAGTGCTATGCATAGTTCCCTGGT 20845279 >seq8 Length=29345952 Score = 102 bits (112), Expect = 1e-16 Identities = 109/142 (77%), Gaps = 3/142 (2%) Strand=Plus/Plus Query 155434 ATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAAT 155493 |||||||| | |||||||||||||| |||| |||| | || ||||| || || ||||| Sbjct 6844675 ATGCCTCTAGA-ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAAC 6844733 Query 155494 ATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTC 155553 || |||||||||| ||| ||| | || ||||| ||||| ||||| || || || || Sbjct 6844734 ATTCTTATGCACCATTTC--AATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTT 6844791 Query 155554 TCTGCTATGCACGGTTCATTGG 155575 ||||||||| |||| |||| Sbjct 6844792 AGTGCTATGCATAGTTCTTTGG 6844813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584763952451760