Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq14 141 3e-29 seq8 86.0 2e-12 >seq14 Length=28343526 Score = 141 bits (156), Expect = 3e-29 Identities = 185/256 (72%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 40920 TGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGG 40979 ||||||||| ||| | || || || || || || || || || | ||| || |||||| Sbjct 20845267 TGCATAGCACTAAAAAGAGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGG 20845208 Query 40980 TGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATT 41039 ||||| ||||||||||| || | |||||| |||| ||| |||||||| || ||| |||| Sbjct 20845207 TGCATAAGAATGTTGTGCTCAGTTTGGAATACAACCATAAAGTTGAAAGTACCAGAGATT 20845148 Query 41040 CCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCT 41099 |||| |||||||| |||||| ||| || ||| | | ||| | | ||||| ||| | Sbjct 20845147 CCTAGAGGCATACTATCAGAAAAACTTCCTTGATCAATTGGGCAGATCAAGAAAACACCA 20845088 Query 41100 AGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTG 41159 | ||| | || | ||| ||| ||||| ||| ||||| || | ||||| || | | Sbjct 20845087 ATAGCAGTTGCAACAGGATCTGAATATGCAACAGCAATCCAAGGACGTATACCCAGACAG 20845028 Query 41160 TATGAAAGTTCCCACT 41175 | ||||||||||| Sbjct 20845027 AAACTAAGTTCCCACT 20845012 >seq8 Length=29345952 Score = 86.0 bits (94), Expect = 2e-12 Identities = 101/133 (76%), Gaps = 3/133 (2%) Strand=Plus/Minus Query 40920 TGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGG 40979 ||||||||| ||| | | || || || || || || || || | ||| || ||||| Sbjct 6844802 TGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACACCTAACAT-TGAAATGG- 6844745 Query 40980 TGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATT 41039 ||||| ||||||||||| || || ||||| |||| ||| |||||||| || ||| |||| Sbjct 6844744 TGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATT 6844685 Query 41040 CCTAAAGGCATAC 41052 ||| |||||||| Sbjct 6844684 -CTAGAGGCATAC 6844673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143685768782364