Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq14 196 5e-45 seq8 131 2e-25 >seq14 Length=28343526 Score = 196 bits (216), Expect = 5e-45 Identities = 210/278 (76%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 67730 AGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTAC 67789 |||| | || || |||| |||||||||||||| || || || ||||||||||| ||||| Sbjct 20845286 AGAAATTACCAGGGAACTATGCATAGCACTAAAAAGAGAGCCGCCGAATACACCAGCTAC 20845227 Query 67790 TCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTA 67849 || | ||| || |||||||||||||| ||||||||||| | |||||| || | ||| | Sbjct 20845226 ACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGTTTGGAATACAACCATAAA 20845167 Query 67850 GTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGG 67909 ||| ||||||||||| || || |||||||| ||||| ||| |||||| | | || Sbjct 20845166 GTTGAAAGTACCAGAGATTCCTAGAGGCATACTATCAGAAAAACTTCCTTGATCAATTGG 20845107 Query 67910 ATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCA 67969 ||| |||||| ||| | | || | | || ||| | || ||||| ||| ||||| Sbjct 20845106 GCAGATCAAGAAAACACCAATAGCAGTTGCAACAGGATCTGAATATGCAACAGCAATCCA 20845047 Query 67970 AGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGAC 68007 |||||| ||||| |||| | || ||||||||||| || Sbjct 20845046 AGGACGTATACCCAGACAGAAACTAAGTTCCCACTCAC 20845009 >seq8 Length=29345952 Score = 131 bits (144), Expect = 2e-25 Identities = 134/170 (79%), Gaps = 4/170 (2%) Strand=Plus/Minus Query 67710 GTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAA 67769 || ||||| ||||| | |||||| ||| ||||| |||||||||||||| || || Sbjct 6844840 GTGGTTTCCCTGATTCAACTAGAAGTTCCAA-AGAACTATGCATAGCACTAAATAGGGAG 6844782 Query 67770 CCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCT 67829 || ||||||||||| ||||| || | ||| || ||||| |||||||| ||||||||||| Sbjct 6844781 CCGCCGAATACACCAGCTACACCTAACAT-TGAAATGG-TGCATAAGAATGTTGTGCTCA 6844724 Query 67830 GCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCAT 67879 || ||||| || | ||| |||| ||||||||||| || | |||||||| Sbjct 6844723 GCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGAT-TCTAGAGGCAT 6844675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566878131657360