Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq9 291 9e-74 seq14 181 1e-40 seq8 104 3e-17 >seq9 Length=62778564 Score = 291 bits (322), Expect = 9e-74 Identities = 453/643 (70%), Gaps = 7/643 (1%) Strand=Plus/Plus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| | | ||||| || | ||| || || | ||||| || ||||||||| || | Sbjct 56234309 ATTAAAGAGTGCTTCCACGTGGTAAAACCTCCTCAGTGAATATAATGTTTTCATGAGGCT 56234368 Query 66646 G---ATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGT 66702 | ||| || |||| ||| | |||| |||||| || || ||||| || || || | Sbjct 56234369 GCTGATCCTGAGCCGCCATCCAAGTGCGAATACCTTCGTTTAAAAGAATATTTTTAGTAT 56234428 Query 66703 AGAACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAG 66762 |||| || || || || || ||||| ||||| | || |||||||| | ||| |||| | Sbjct 56234429 AGAAAGTTTC-AAGTCCGGATCTTCCGCTGCACAAATTTCTTGGGAAATGAAGCCATAGG 56234487 Query 66763 CACGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAG 66822 ||| ||||| | ||| ||||| | || | | | ||| ||| | ||| | || | Sbjct 56234488 CACATAGGTTCAAAGCTAGACCTACTATTACAAGAGCACTCATCCTTAAACCAGTTACTG 56234547 Query 66823 GAACAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCT 66882 | ||||| ||||||||||| || ||||| |||||| ||| ||| |||||||| Sbjct 56234548 GTACAAATAACATAAAGAATTGTAACCAATGTTTATTGGAAAAAGCAGCCCCAAAGATTC 56234607 Query 66883 GAGACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGA 66942 | ||||| |||||||| || || |||||||| ||||||||||| ||||| | | || | Sbjct 56234608 GTGACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAATTGGGTTAA 56234667 Query 66943 ATGCTTTGAAAGTGTTTGCTTGTTCACCATCTTC--ATACAGAGTATTCTCTACTGTAAC 67000 | || || | ||||| ||||||| ||| ||| | | |||| ||||| ||| | Sbjct 56234668 AAGCACATAATTTATTTGCACCATCACCATTTTCAGATAAAAAATATT-TCTACAGTAGC 56234726 Query 67001 ACCATGAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAA 67060 ||||| ||| || | | || || | || || | ||| || | ||||||| |||||| Sbjct 56234727 ACCATCAATAGCGCATAACAGAGCCGCGCCAAGTACACCGGCAATTCCCATCAAATGAAA 56234786 Query 67061 CGGGTTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGA 67120 | |||| | ||| ||||| || ||||| | ||||| | ||||||||| || || | Sbjct 56234787 TGAATTCAGTGCCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCCGC 56234846 Query 67121 GACCCCGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGAC 67180 || || ||| || | || |||||| |||||||| || || || || |||||||| Sbjct 56234847 TACACCAAAACTAGGCACAAAGAACCAATCAGATTGACCTAGTGGATAAATTAGAAAGAC 56234906 Query 67181 ACTAACAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTG 67223 |||||||||||| || ||||||||||| | || | |||| Sbjct 56234907 TGAAACAAAAACAGCAATTGGACCAGAGAATGTGATTGTATTG 56234949 Score = 122 bits (134), Expect = 1e-22 Identities = 272/388 (70%), Gaps = 18/388 (5%) Strand=Plus/Minus Query 68428 GCAGAGTATGCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCA 68487 || || ||||||||| ||||||||||||||||| ||||| | ||||||||| ||| Sbjct 10191025 GCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCA 10190966 Query 68488 CGTCCCATGTATGCAAAGATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAG-GACC 68546 || ||||| || | | ||||| | ||||| | | | |||| ||| ||| Sbjct 10190965 CGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGCAACC 10190906 Query 68547 ACCATTGTACAACCA-CTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGAC 68605 || ||||| | ||| ||||||| || ||| |||| ||| |||| ||||| || | || Sbjct 10190905 ACGTTTGTATAGCCATTTCATCAACGGATGCAGCTT-CCAGATGGCGTAAAAATGCAAAC 10190847 Query 68606 CA-ATTG-CATTTGA-ACTAGGAACAACAGCACCAGAAATGATGTTGTT--ACCATACAG 68660 || || | | | || | ||| || || ||||| ||| | || ||||| ||| || || Sbjct 10190846 CACATAGCCCTGAGACAGTAGAAATAA-TGCACCGGAACTAATATTGTTTCACCTTAAAG 10190788 Query 68661 AAGTGAACCAG-CAACAGGTTCACGAATACCATCGATGTCCAC-AGGGGGAGCAGCGATG 68718 ||| | ||||| ||||||||||| ||||| || || || || || || |||||| ||| Sbjct 10190787 AAGAG-ACCAGAAAACAGGTTCAC-AATACACTCAATATCTACTAGAGGAAGCAGCAATG 10190730 Query 68719 AAGGCGACGATGAAACAGATGGTTGCTG-CAAGCAGCGTAGGGATCATCAGGACGCCGAA 68777 || | | || ||| | || || | ||| | ||||||||||||| || || || Sbjct 10190729 AA-TCTA--ATAAAAACGGAAGTAGCGGTCAATTAAGGTAGGGATCATCAAAACACCAAA 10190673 Query 68778 CCAACCAAC-GTAAAGGCGGTTCTCTGT 68804 ||| ||||| ||||| | ||| |||| Sbjct 10190672 CCATCCAACTGTAAAACGGTTTCACTGT 10190645 >seq14 Length=28343526 Score = 181 bits (200), Expect = 1e-40 Identities = 207/278 (74%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 68211 AGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCAGCAAC 68270 |||| | |||||||||| |||||| ||||| || ||||| || || ||||| ||||| || Sbjct 20845286 AGAAATTACCAGGGAACTATGCATAGCACTAAAAAGAGAGCCGCCGAATACACCAGCTAC 20845227 Query 68271 GCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGCATGTA 68330 || | ||| || || |||||||| || ||||||||||| | |||||| || | ||| | Sbjct 20845226 ACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGTTTGGAATACAACCATAAA 20845167 Query 68331 GTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACCGAAAGG 68390 ||||||||||||||| || || |||||||| ||||| || |||||| | | || Sbjct 20845166 GTTGAAAGTACCAGAGATTCCTAGAGGCATACTATCAGAAAAACTTCCTTGATCAATTGG 20845107 Query 68391 ATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAACACAGATCCA 68450 ||| || ||| || | || | ||||||||| | || ||||||||| ||||| Sbjct 20845106 GCAGATCAAGAAAACACCAATAGCAGTTGCAACAGGATCTGAATATGCAACAGCAATCCA 20845047 Query 68451 AGGACGCATACCAAGACGATAGGAAAGTTCCCATTCAC 68488 |||||| ||||| |||| | ||||||||| |||| Sbjct 20845046 AGGACGTATACCCAGACAGAAACTAAGTTCCCACTCAC 20845009 >seq8 Length=29345952 Score = 104 bits (114), Expect = 3e-17 Identities = 115/150 (77%), Gaps = 4/150 (3%) Strand=Plus/Minus Query 68211 AGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCAGCAAC 68270 |||||| ||| |||| |||||| ||||| || || || || || ||||| ||||| || Sbjct 6844820 AGAAGTT-CCAAAGAACTATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTAC 6844762 Query 68271 GCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGCATGTA 68330 || | ||| ||| ||||||| || ||||||||||| || ||||| || | ||| | Sbjct 6844761 ACCTAACATT--GAAATGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAA 6844704 Query 68331 GTTGAAAGTACCAGAAATGCCGAGAGGCAT 68360 ||||||||||||||| || | |||||||| Sbjct 6844703 GTTGAAAGTACCAGAGAT-TCTAGAGGCAT 6844675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571984709472720