Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq9 114 2e-20 seq18 104 4e-17 seq13 96.9 6e-15 seq5 89.7 9e-13 >seq9 Length=62778564 Score = 114 bits (126), Expect = 2e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| || ||||| | || || | | ||| || | || || |||||||| || || || Sbjct 30454927 AATGTTGTAGTCAGCCAAGGTACGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAACCT 30454868 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||| || || ||||| || |||||||| ||||| ||||||| ||| | || |||||| Sbjct 30454867 CTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGGATTTTGGCTTTCACGTTGTCAATAGT 30454808 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 |||||| ||| ||||||||||| || || || || || || || || ||||| || || Sbjct 30454807 GTCGGAACTCTCCACTTCTAGAGTAATGGTCTTCCCGGTAAGGGTCTTGACAAAGATCTG 30454748 Query 193358 CAT 193360 ||| Sbjct 30454747 CAT 30454745 Score = 104 bits (114), Expect = 4e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 || || ||||| | |||| ||| || ||| |||||||| | | ||||| ||| Sbjct 30497140 AGAACAAGATGTAGAGTAGACTCCTTCTGAATGTTATAGTCAGCGAGAGTTCTCCCATCC 30497081 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 || | || ||||||||||| || || ||||| || || ||||| || || || || ||| Sbjct 30497080 TCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCGGGAGGAATACCCTCCTTGTCT 30497021 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 || || || | ||| | || ||||||||| ||| ||| || || | ||| ||||| Sbjct 30497020 TGGATCTTAGCTTTGACGTTGTCAATAGTATCTGAACTCTCCACCTCCAAAGTAATAGTC 30496961 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || |||| || || || || |||||||| Sbjct 30496960 TTTCCGGTTAATGTCTTAACGAAGATTTGCAT 30496929 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| || | || || | |||| || | ||||| ||| || || || ||||| Sbjct 30497386 ATACCTCCACGCAGACGCAACACCAAGTGAAGTGTAGACTCCTTTTGGATGTTGTAGTCC 30497327 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || ||||| || || | ||| ||||||||||| || || ||||| || || ||| Sbjct 30497326 GCCAATGTTCTGCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGA 30497267 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || || || || || | || | || ||| || ||||| ||| Sbjct 30497266 GGAATGCCTTCCTTGTCCTGGATCTTAGCCTTAACGTTGTCAATTGTGTCGGAGCTCTCC 30497207 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || |||||||| || || || ||||| | || || ||||| || ||||| Sbjct 30497206 ACCTCTAGAGTAATGGTCTTCCCTGTCAATGTCTTGACAAAGATCTGCAT 30497157 Score = 89.7 bits (98), Expect = 9e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 || || |||||||| || | ||| || ||| || ||||| | | || | ||| Sbjct 30496912 AGGACGAGATGCAAAGTTGACTCCTTTTGAATGTTGTAGTCAGCGAGGGTACGCCCATCT 30496853 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 || | || || |||||||| || ||||| || ||||| ||||| || ||||||||||| Sbjct 30496852 TCAAGCTGCTTACCGGCAAAGATCAATCTTTGCTGATCCGGAGGAATACCTTCTTTATCC 30496793 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 || || |||| ||| | || || ||||| || ||| || || | ||| || || Sbjct 30496792 TGAATCTTGGCTTTAACGTTGTCGATGGTATCAGAGCTCTCCACCTCCAAAGTGATCGTC 30496733 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || || || || || || ||||| Sbjct 30496732 TTCCCTGTCAGTGTCTTAACGAAGATCTGCAT 30496701 >seq18 Length=77673080 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||||| ||||| || ||||| | || | ||| || ||||| ||||| Sbjct 62463117 ATACCACCTCTCAGACGAAGCACAAGATGGAGCGTGGACTCCTTCTGGATATTGTAGTCA 62463058 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | ||| | ||| |||| || || |||||||| || | ||||| ||||| || Sbjct 62463057 GCAAGCGTGCGTCCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGT 62462998 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| |||||||| || || || | || | || || || || || |||| Sbjct 62462997 GGGATTCCCTCTTTATCCTGGATCTTAGCCTTGACGTTGTCTATGGTGTCTGAGCTCTCA 62462938 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | || || |||||||| || || || || ||||| |||||||| Sbjct 62462937 ACCTCCAAGGTGATGGTTTTACCGGTGAGGGTCTTGACAAAGATTTGCAT 62462888 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||||||||| | || || ||||| | || | ||| || || || || ||| Sbjct 62462661 ATACCACCTCTCAACCTGAGAACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAATCG 62462602 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || || || || | || || |||||||| || | ||||| || || || Sbjct 62462601 GCCAAAGTCCTGCCGTCCTCGAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGGTCCGGT 62462542 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| |||||||| || || || | || | || || || ||||| ||| Sbjct 62462541 GGGATTCCCTCTTTATCCTGGATCTTAGCCTTGACGTTATCGATGGTGTCGGAGCTCTCG 62462482 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || || || || || ||||| || || |||||||| Sbjct 62462481 ACCTCGAGAGTGATGGTCTTGCCGGTGAGAGTTTTCACGAAAATTTGCAT 62462432 >seq13 Length=83567108 Score = 96.9 bits (106), Expect = 6e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| ||||||||||| || || ||||| || || || || || || ||||| Sbjct 39908338 ATCCTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCTTT 39908279 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| || |||| ||| | || ||| |||||||| ||| || || | ||| || Sbjct 39908278 GTCTTGGATCTTGGCTTTGACGTTGTCAATGGTATCGGAGCTCTCCACCTCCAAAGTGAT 39908219 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || ||||| | || || ||||| |||||||| Sbjct 39908218 AGTCTTTCCTGTCAAGGTCTTCACAAAAATTTGCAT 39908183 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||||| | || | |||| || | |||| |||||| ||| || || || Sbjct 62924344 ATACCACCTCGGAGACGCAAGACCAAGTGAAGCGTAGACTCTTTCTGAATGTTGTAATCA 62924285 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | ||||| || |||| || ||||||||||| || | |||||| || || ||| Sbjct 62924284 GCCAGTGTTCTGCCGTCCTCTAGCTGCTTTCCGGCAAAGATGAGTCTCTGCTGGTCTGGA 62924225 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || || | || | ||| ||||| || ||| ||| Sbjct 62924224 GGAATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTGTCTATAGTGTCTGAACTCTCC 62924165 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || || || || || || || || || || ||||| Sbjct 62924164 ACCTCCAGAGTGATGGTCTTCCCGGTCAGTGTCTTAACGAAAATCTGCAT 62924115 Score = 86.0 bits (94), Expect = 1e-11 Identities = 161/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | | || || ||||| || || | ||| || ||| || Sbjct 39908191 AATTTGCATACCACCACGGAGCCTGAGAACGAGATGTAAAGTTGACTCCTTCTGAATGTT 39908132 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| | | ||||| ||| || || || ||||||||||| || || ||||| || Sbjct 39908131 GTAGTCAGCAAGAGTTCTTCCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTG 39908072 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || ||||| || ||||| || || || | || | || || || || || Sbjct 39908071 GTCCGGTGGGATTCCCTCCTTATCCTGAATCTTTGCCTTGACGTTGTCGATGGTGTCAGA 39908012 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || || | ||| ||||| || || || | || || ||||| |||||||| Sbjct 39908011 GCTCTCCACCTCCAAAGTGATAGTCTTTCCGGTCAATGTCTTGACAAAGATTTGCAT 39907955 >seq5 Length=38841276 Score = 89.7 bits (98), Expect = 9e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 193169 CTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAA 193228 |||||| ||| || || || | || || | | ||| || || || ||||||||||| Sbjct 24217555 CTCTTTCTGAATGTTGTAATCCGCCAAGGTGCGACCATCTTCCAACTGCTTTCCGGCAAA 24217496 Query 193229 AATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATT 193288 || || ||||| || || || || ||||| || ||||| || || |||| || | ||| Sbjct 24217495 GATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTTGGCCTTAACATT 24217436 Query 193289 TAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTAC 193348 |||||| || || |||||| || | ||| ||||| || || || | || || || Sbjct 24217435 GTCAATAGTGTCAGAGCTCTCAACCTCCAAAGTGATAGTCTTTCCGGTCAAGGTCTTGAC 24217376 Query 193349 AAATATTTGCAT 193360 ||| || ||||| Sbjct 24217375 AAAGATCTGCAT 24217364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899544799602720