Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq9 118 2e-21 seq1 104 3e-17 seq17 98.7 1e-15 seq13 91.5 2e-13 seq10 89.7 8e-13 seq5 89.7 8e-13 seq15 86.0 9e-12 seq12 86.0 9e-12 >seq9 Length=62778564 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | || || || || ||||| ||||||| || ||| Sbjct 30454745 ATGCAGATCTTTGTCAAGACCCTTACCGGGAAGACCATTACTCTAGAAGTGGAGAGTTCC 30454804 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||||||| ||||| ||||| ||||||||||| |||||||| || Sbjct 30454805 GACACTATTGACAACGTGAAAGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 30454864 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | |||||| ||||||||||| ||| | || || | || || || Sbjct 30454865 CAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGATGGTCGTACCTTGGCTGACTACAAC 30454924 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || || ||| |||| ||||| || |||||| Sbjct 30454925 ATTCAGAAGGAGTCGACTCTTCACTTGGTGTTA 30454957 Score = 116 bits (128), Expect = 5e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || |||| ||||| || ||||| |||||||| || || || || ||| Sbjct 30496929 ATGCAAATCTTCGTTAAGACATTAACCGGAAAGACTATTACTTTGGAGGTGGAGAGTTCA 30496988 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||||| ||| ||| || ||||| || || || || ||||| || || Sbjct 30496989 GATACTATTGACAACGTCAAAGCTAAGATCCAAGACAAGGAGGGTATTCCTCCCGACCAG 30497048 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | |||||| ||||||||||| ||| |||||| | | || ||||| Sbjct 30497049 CAGAGGTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGGAGAACTCTCGCTGACTATAAC 30497108 Query 156003 AT 156004 || Sbjct 30497109 AT 30497110 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || |||| ||| |||| || || || || || || || || || ||| Sbjct 30496701 ATGCAGATCTTCGTTAAGACACTGACAGGGAAGACGATCACTTTGGAGGTGGAGAGCTCT 30496760 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||||| ||| || || || ||||||||||| || ||||| || || Sbjct 30496761 GATACCATCGACAACGTTAAAGCCAAGATTCAGGATAAAGAAGGTATTCCTCCGGATCAG 30496820 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||||||||||| | ||||||||||||||| |||||| Sbjct 30496821 CAAAGATTGATCTTTGCCGGTAAGCAGCTTGAAGAT 30496856 >seq1 Length=45320942 Score = 104 bits (114), Expect = 3e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || |||| || ||||| ||||| ||||| || || || || ||| || Sbjct 18861789 ATGCAAATCTTCGTTAAGACTTTGACGGGAAAGACTATCACTTTGGAGGTTGAAAGCTCC 18861730 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| ||| || || ||||| ||||| || || || || || || Sbjct 18861729 GACACTATTGACAACGTCAAAGCCAAGATCCAAGACAAAGAGGGTATCCCACCGGACCAG 18861670 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||| || ||||||||||| ||| | || || ||||||| || Sbjct 18861669 CAGAGGTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGTCGCACCTTGGCAGATTACAAC 18861610 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || ||| | |||||||| || || || Sbjct 18861609 ATCCAGAAGGAGTCTACGCTTCACTTGGTCTT 18861578 >seq17 Length=44223734 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || ||| |||| ||||| || || || |||| ||||| ||| Sbjct 34300455 ATGCAGATCTTTGTCAAGACACTGACGGGAAAGACGATCACTCTAGAGGTCGAGAGTTCC 34300514 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||||||| || || ||||| || ||||| || ||||| || || Sbjct 34300515 GACACCATTGACAACGTGAAAGCCAAGATCCAAGACAAGGAAGGTATTCCTCCGGACCAG 34300574 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | |||||| ||||||||||| ||| | || || | || || || Sbjct 34300575 CAGCGTTTGATCTTTGCCGGCAAGCAGCTCGAGGATGGTCGTACCTTGGCTGACTACAAC 34300634 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || ||| | || |||||||| ||||| Sbjct 34300635 ATTCAGAAGGAGTCCACTCTTCATTTGGTGTT 34300666 Score = 86.0 bits (94), Expect = 9e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || ||| | || ||||| || || ||| |||| || || || Sbjct 38927868 ATGCAGATCTTTGTCAAGACACTCACCGGAAAGACGATCACACTAGAGGTGGAGAGCTCC 38927927 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| || ||| || ||||| || || || || || || || || Sbjct 38927928 GACACCATCGATAACGTCAAGGCTAAGATCCAAGACAAGGAGGGAATCCCACCTGATCAG 38927987 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | |||||| ||||||||||| ||| |||||| || | || || || Sbjct 38927988 CAGAGGTTGATCTTTGCCGGGAAGCAGCTCGAGGATGGTAGAACTCTAGCTGACTACAAC 38928047 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || ||| |||| || ||| | ||||| Sbjct 38928048 ATCCAGAAGGAGTCGACTCTGCATCTGGTGTT 38928079 >seq13 Length=83567108 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||| ||||| |||||||| || || || || || Sbjct 62907154 ATGCAGATCTTTGTCAAGACGTTGACGGGAAAGACTATTACTTTGGAGGTGGAGAGCTCC 62907213 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| || || ||||| ||||| || || ||||| || || Sbjct 62907214 GACACCATTGACAATGTCAAAGCAAAGATCCAAGACAAAGAGGGTATTCCTCCGGACCAG 62907273 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACT 155987 || || ||||| | |||||| ||||||||||| ||| |||||| Sbjct 62907274 CAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGATGGAAGAACT 62907318 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || |||||||||||||| ||||| || || || || ||| Sbjct 62923887 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAAACCATTACTTTGGAGGTGGAGAGTTCA 62923946 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || ||| || || || ||||| || || || ||||| || || Sbjct 62923947 GATACCATCGACAATGTTAAAGCGAAGATTCAGGATAAGGAGGGTATTCCTCCTGACCAG 62924006 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || ||||| | ||| || ||||| || |||||| Sbjct 62924007 CAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGAT 62924042 >seq10 Length=22354415 Score = 89.7 bits (98), Expect = 8e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || || ||||| || || |||||||| || ||||| ||| || Sbjct 21870339 ATGCAAATATTTGTGAAGACTTTGACAGGCAAGACTATTACCTTGGAAGTTGAAAGCTCA 21870398 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || ||||| ||| || || || || ||||| || ||||| || ||| Sbjct 21870399 GACACAATCGACAATGTGAAGGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGACCAA 21870458 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | || ||||| ||||| || ||| | || | ||||||| || Sbjct 21870459 CAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGCACGCTTGCAGATTACAAC 21870518 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || ||| |||| || ||||| || Sbjct 21870519 ATTCAGAAGGAGTCGACTCTGCATTTGGT 21870547 >seq5 Length=38841276 Score = 89.7 bits (98), Expect = 8e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 155909 AATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCA 155968 || ||| || |||||||| ||||| ||||| |||||||| | || | ||||||||||| Sbjct 4761499 AAAACAGGACAAAGAAGGTATACCACCAGACCAACAAAGGCTCATCTTCGCCGGTAAGCA 4761440 Query 155969 GCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTT 156028 ||||||||| |||||| || | ||||| || || |||||| | || |||||| | Sbjct 4761439 GCTCGAAGACGGCAGAACCCTAGCCGATTACAACATCCAGAAAGAGTCTACTCTTCATCT 4761380 Query 156029 AGTGTTAAG 156037 || || || Sbjct 4761379 CGTCTTGAG 4761371 >seq15 Length=50573455 Score = 86.0 bits (94), Expect = 9e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||| |||||||| || || |||| || || || Sbjct 31711231 ATGCAGATCTTTGTCAAGACCTTGACAGGAAAAACAATCACTCTAGAGGTTGAGAGCTCC 31711172 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || || || ||||| || || || || || || || || Sbjct 31711171 GACACCATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCACCGGACCAG 31711112 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | ||| ||||||||||| ||||| | || || | || || ||| Sbjct 31711111 CAGAGATTGATCTTTGCTGGTAAGCAGCTTGAAGACGGTCGTACCTTGGCTGACTACAAT 31711052 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || ||| | |||||||| || ||||| Sbjct 31711051 ATCCAGAAGGAGTCCACGCTTCACTTGGTGTT 31711020 >seq12 Length=60369500 Score = 86.0 bits (94), Expect = 9e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| ||||||||||||| ||||| ||||| || || || || || || Sbjct 48264772 ATGCAGATTTTTGTTAAAACATTGACGGGAAAGACTATCACTTTGGAGGTTGAGAGCTCC 48264831 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| || || ||||| ||||| || || || || || || Sbjct 48264832 GACACCATTGACAATGTCAAAGCCAAGATCCAAGACAAAGAGGGTATTCCCCCGGACCAG 48264891 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | || || ||||| ||||| ||| | ||| | | ||||| || Sbjct 48264892 CAGAGGTTGATCTTCGCAGGCAAGCAACTCGAGGATGGACGTACTCTTGCTGATTACAAC 48264951 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || ||| |||| ||||| || || || Sbjct 48264952 ATCCAGAAGGAGTCGACTCTTCACTTGGTCTT 48264983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731782839693600