Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq13 95.1 2e-14 seq9 93.3 8e-14 seq10 91.5 3e-13 seq1 84.2 4e-11 >seq13 Length=83567108 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | || ||||| || || || | |||| || || ||| || || || Sbjct 62924116 ATACCCCCACGTAGACGTAAGACCAAGTGAAGTGTAGATTCCTTTTGAATGTTGTAGTCA 62924057 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || | || || | ||| || |||||||| || || ||||| |||||||| Sbjct 62924056 GCAAGAGTACGCCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGA 62923997 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || ||||| || || || ||| ||||| || |||||||| || Sbjct 62923996 GGAATACCCTCCTTATCCTGAATCTTCGCTTTAACATTGTCGATGGTATCTGAACTCTCC 62923937 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | |||||||||||| ||||| || || || | || |||||||| Sbjct 62923936 ACCTCCAAAGTAATGGTTTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 62923887 >seq9 Length=62778564 Score = 93.3 bits (102), Expect = 8e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 171866 ATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTG 171925 ||||| ||||| ||| || ||| ||||| || | | || || | || || | || Sbjct 30497132 ATGTAGAGTAGACTCCTTCTGAATGTTATAGTCAGCGAGAGTTCTCCCATCCTCGAGCTG 30497073 Query 171926 TTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTT 171985 || || ||||| || || ||||| ||||| || || || || || || ||||| || || Sbjct 30497072 CTTTCCGGCAAAGATCAACCTCTGCTGGTCGGGAGGAATACCCTCCTTGTCTTGGATCTT 30497013 Query 171986 ATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 172045 | ||| || || ||||||||||| || || || | |||||| || || || || Sbjct 30497012 AGCTTTGACGTTGTCAATAGTATCTGAACTCTCCACCTCCAAAGTAATAGTCTTTCCGGT 30496953 Query 172046 TAATGTTTTAATGAATATCTGCAT 172069 |||||| |||| ||| || ||||| Sbjct 30496952 TAATGTCTTAACGAAGATTTGCAT 30496929 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || ||||| || || || | ||| | ||| || ||| || || || Sbjct 30454974 ATGCCACCACGGAGACGTAACACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCA 30454915 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | || | || || | || || || ||||| || || ||||| ||||| || Sbjct 30454914 GCCAAGGTACGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGA 30454855 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| ||||| ||| || || ||||| || || || Sbjct 30454854 GGAATGCCTTCTTTGTCTTGGATTTTGGCTTTCACGTTGTCAATAGTGTCGGAACTCTCC 30454795 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||||||||||||| || || || | || || | || |||||||| Sbjct 30454794 ACTTCTAGAGTAATGGTCTTCCCGGTAAGGGTCTTGACAAAGATCTGCAT 30454745 >seq10 Length=22354415 Score = 91.5 bits (100), Expect = 3e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | ||| || | || ||||| | ||| | ||| || ||| || ||||||| Sbjct 21870565 CCACCACGAAGACGCAGAACCAAATGCAGAGTCGACTCCTTCTGAATGTTGTAATCTGCA 21870506 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | | || | || || | ||||||||||| || || | |||||||||||| || || Sbjct 21870505 AGCGTGCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGA 21870446 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || ||||| || || || || ||| || ||||| || || ||||| ||| ||| Sbjct 21870445 ATCCCTTCCTTGTCCTGAATCTTAGCCTTCACATTGTCGATTGTGTCTGAGCTTTCAACT 21870386 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || | ||||| || || || || || || || | ||||| |||||| Sbjct 21870385 TCCAAGGTAATAGTCTTGCCTGTCAAAGTCTTCACAAATATTTGCATT 21870338 >seq1 Length=45320942 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171925 GTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTT 171984 || ||| | |||| || | ||||||||| | ||||| || ||||| || ||||| || | Sbjct 18518402 GTCTACTACCAAACATGATTCTCTGTTGATTTGGTGGGATCCCTTCCTTGTCTTGAATCT 18518461 Query 171985 TATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAG 172044 | | ||||||| | | | ||| | || ||||||| ||||||||||||| | Sbjct 18518462 TTTCCTTTACATACTCAACAATGTCTAAGCTGTCAACTTCTAAGGTAATGGTTTTACGAC 18518521 Query 172045 TTAATGTTTTAATGAATATCTGCATT 172070 | |||||||| | |||||| |||||| Sbjct 18518522 TGAATGTTTTCACGAATATTTGCATT 18518547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905025731806800