Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq18 122 3e-22 seq1 105 2e-17 seq17 95.1 4e-14 seq14 87.8 5e-12 seq10 84.2 6e-11 >seq18 Length=77673080 Score = 122 bits (134), Expect = 3e-22 Identities = 278/412 (67%), Gaps = 20/412 (5%) Strand=Plus/Plus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 ||| |||||||| |||||||| || || || || || || | ||| || ||| || Sbjct 57999583 AAACCCATCCATTTCAGTTAAAATCTGGTTTAGCGTCTGCTCACGTTCGTCGTTTCCTCC 57999642 Query 288999 TCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAAT 289058 || | || ||| || | ||| || | |||||||||||||| || |||||||| | Sbjct 57999643 TCCTAAA----CCGGTTCCC--CTTATTCTCCCAACAGCATCAATCTCATCAATGAACAC 57999696 Query 289059 CACACACGGAGAAT-----TTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCT 289113 | ||| || || | |||| || | ||| || || ||||| || | |||||| Sbjct 57999697 TAAACAGGGTGAGTTAGCCTTTGCCTTG---TTG--AACAAGTCTCTAACCCTAGATGCT 57999751 Query 289114 CCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTT 289173 || | ||||||| |||| |||| || || ||| | || | | | ||| | || Sbjct 57999752 CCTACACCAACAAACATCTCTATGAACTCCGAACCAGACAATGAGAAGAACGGAACTCCA 57999811 Query 289174 GCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAAT 289233 ||||| || |||| ||| | ||||| || ||||| || ||||| || ||||| || Sbjct 57999812 GCTTCTCCGGCTATGGCCTTGGCCAGGAGAGTCTTTCCGGTTCCTGGCGGTCCTGTCAAC 57999871 Query 289234 AGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACTTA-TATTTCTCAGGGCTCTTTAAAA 289291 | || || ||||| | ||| || |||| || || | |||||||||| | || || | Sbjct 57999872 AAGACACCTTTTGGGATTTTAGCACCCA--AGGCTGAGAATTTCTCAGGTGTTTTCAAGA 57999929 Query 289292 ATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 ||||||| || || |||| || | || || || || |||||| || || Sbjct 57999930 ATTCTACTATCTCTTCAAAGTCTTGCTTGGCTTCGTCTACTCCTGCAACGTC 57999981 Score = 105 bits (116), Expect = 2e-17 Identities = 276/413 (67%), Gaps = 20/413 (5%) Strand=Plus/Minus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 |||| || ||||| |||||||| || || || || || || | ||| || ||| | Sbjct 55030537 TAAACCCGTCCATCTCGGTTAAAATCTGGTTCAGCGTCTGCTCACGTTCGTCGTTTCCTC 55030478 Query 288998 CTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAA 289057 ||| | || ||| || ||| | || | || ||||||||||| || |||||||| | Sbjct 55030477 CTCCTAAA----CCGGTTC-CTC-TAATTCTCCCCACAGCATCAATCTCATCAATGAACA 55030424 Query 289058 TCACACACGGAGAAT-----TTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGC 289112 || ||| || || | |||| || | ||| || || ||||| || | ||||| Sbjct 55030423 CCAAACAGGGTGAGTTAGCCTTTGCCTTG---TTG--AACAAGTCTCTAACCCTAGATGC 55030369 Query 289113 TCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATT 289172 ||||| ||||||| |||| |||| ||| || ||| |||| | | | || | || Sbjct 55030368 TCCAACACCAACAAACATCTCTATAAACTCCGAACCGGACAGTGAGAAAAAAGGAACTCC 55030309 Query 289173 TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA 289232 ||||| || |||| ||| | |||| || ||||| || ||||| || ||||| | Sbjct 55030308 AGCTTCTCCGGCTATAGCCTTGGCCAAGAGAGTCTTTCCGGTTCCTGGCGGTCCTGTCAG 55030249 Query 289233 TAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACTTA-TATTTCTCAGGGCTCTTTAAA 289290 | || || ||||| | ||| || |||| || || | |||| || || | || || Sbjct 55030248 CAAGACACCTTTTGGGATTTTAGCTCCCA--AGGCTGAGAATTTATCTGGTGTTTTCAAG 55030191 Query 289291 AATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 ||||| || ||||| |||| || | || || || || |||||| || || Sbjct 55030190 AATTCAACGATTTCTTCAAAGTCTTGCTTGGCTTCGTCTACTCCTGCAACGTC 55030138 >seq1 Length=45320942 Score = 105 bits (116), Expect = 2e-17 Identities = 226/338 (67%), Gaps = 0/338 (0%) Strand=Plus/Minus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 ||||| || ||| || || || |||||| || ||||| ||||| || || | | Sbjct 8594557 TTTCTAACCGTCCCGTCGTATTTAACCATAATATCCTCCATGGCCTTGACCAACCGCCTC 8594498 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 ||||| || ||||| |||||||| ||||| ||||| || ||||| | | || ||| Sbjct 8594497 TGAATGTATCCAGTCTCTGATGTTTTCACAGCGGTATCGATAAGACCTTCCCTTCCTCCC 8594438 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718 || || ||||| || | ||||| || | ||| | | | || |||| ||||| Sbjct 8594437 ATTGCGTGGAAAAAAAACTCTTGAGGAGTCAACCCACGCAGGTACGAATTCTCCACGAAC 8594378 Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAG 302778 ||||| |||||| | ||| ||||| || || |||| |||| || | Sbjct 8594377 CCACGGCTCTCGGGACCGTAGTCATCTTTGGTGAAATGAGGCAACGTCCGCCCTTCGAAA 8594318 Query 302779 CCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAA 302838 || ||||||| || || || || ||||||||||| || | ||||| ||||||| || Sbjct 8594317 CCAAATGGGATCCGTTTCCCTTCCACGTTCTGCTGACCGACGCACGCTGTCATCTGAGAG 8594258 Query 302839 ATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 || || | ||| || ||||| || || | ||||| Sbjct 8594257 ATGTTAATGAAACTTCCTTTGGATCCTGCTGTCACCAT 8594220 >seq17 Length=44223734 Score = 95.1 bits (104), Expect = 4e-14 Identities = 303/468 (65%), Gaps = 14/468 (3%) Strand=Plus/Minus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCC 288948 ||||| ||||| || ||||| || | |||| || | | | || ||| |||||| Sbjct 43157801 ATATCTGCTCTATTGGTTGCAGCAACCACAATAACACCAGTGTTACCCTCAAACCCATCC 43157742 Query 288949 ATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCA 289008 || || || | |||||||| || || || ||||||||||| ||||| || Sbjct 43157741 ATCTCAGTCAAGAGCTGATTAAGCGTCTGCTCTCTTTCATCATT---ACCTC------CA 43157691 Query 289009 CCCGAATCG----CTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACA 289064 || || || | ||| | |||||||||||||||| ||||| | |||| | || Sbjct 43157690 CC-GATTCCAGTTCCCCTCTGCCTACCAACAGCATCAATCTCGTCCACAAAAACAATGCA 43157632 Query 289065 CGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAAC 289124 ||||| ||| | | || || || | || | || | || || |||| ||| || Sbjct 43157631 CGGAGCATTCTCCTTGGCCTTTTTGAAAAGATCACGGACCCTCGAAGCACCAACACCGAC 43157572 Query 289125 ATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGC 289184 | |||| || ||||| |||||| | || | || ||| | |||| ||||| || || Sbjct 43157571 AAACATCTCAACAAACTCAGAACCCGAGATGGAAAAGAAAGGTACACCAGCTTCACCAGC 43157512 Query 289185 TACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTT 289244 | ||| |||||| || || ||||| || ||||| || || | | || || || || Sbjct 43157511 GATGGCCTTCGCCAAGAGGGTTTTACCAGTACCAGGAGGGCCAACAAGGAGGACACCTTT 43157452 Query 289245 TGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTC 289304 || | || ||| | | | | ||||||| |||| | ||| || || | ||| Sbjct 43157451 CGGGATCCGAGCACCAACCGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACTTC 43157392 Query 289305 CTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | | || | || || |||||| ||| || || ||| ||||||| Sbjct 43157391 CATGAAATCTTGCTTGGCTTCATCAACTCCAGCAACGTCATCAAAAGT 43157344 Score = 87.8 bits (96), Expect = 5e-12 Identities = 116/160 (73%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 233259 TTAAAAATGTT-GTAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGC 233317 || |||| ||| | |||||| ||||||||||| ||||| || |||||||| |||| |||| Sbjct 33251473 TTCAAAAAGTTAGCAGCACCATGAGCAATCATGCAATCTCGCTCCATTTCTCCAAAACGC 33251532 Query 233318 AGACCACCATCATTTGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCC 233377 || ||||||||| ||| || || | | | ||| | ||||| | |||||| Sbjct 33251533 AGTCCACCATCACGTGATCTTCCTTCAGCAGGTTGTCTTGTTAAGATTTGCACAGGACCC 33251592 Query 233378 TGAGCACGATAATTAATTTTATCTTTAACCATATGCTTCA 233417 | ||||| | | || || || | |||||||||||||| Sbjct 33251593 CGTCCACGAGAGTGGATCTTGTCATCAACCATATGCTTCA 33251632 >seq14 Length=28343526 Score = 87.8 bits (96), Expect = 5e-12 Identities = 308/471 (65%), Gaps = 20/471 (4%) Strand=Plus/Minus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAG-ATTCGGTTTGCTT-AAATCCAT 288946 ||||| |||||||| ||||| || | ||| | | | | | ||| ||| ||| |||| Sbjct 17773149 ATATCTGCTCTGTTGGTTGCAGCAACTACGATGACACCAGT--GTTACCTTCAAAACCAT 17773092 Query 288947 CCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAAT 289006 |||| || || | |||||||| || ||||| ||||||||||| ||||| Sbjct 17773091 CCATCTCCGTCAAGAGCTGATTAAGCGTCTGTTCTCTTTCATCATT---ACCTC------ 17773041 Query 289007 CACCCGAATC--GCTCCttttt--ttACCAACAGCATCAATTTCGTCAATGAAAATCACA 289062 || || | || | |||| ||| ||||||||||||| ||||| || | || | | Sbjct 17773040 CA-CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCCACAAAGACAATG 17772982 Query 289063 CACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCA 289122 || |||| |||| | || || || | || | || | || || |||| ||| Sbjct 17772981 CAGGGAGCGTTTTCCTTGGCCTTTTTGAAAAGATCACGGACCCTTGAAGCACCAACACCG 17772922 Query 289123 ACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCT 289182 || |||| || ||||| |||||| | || | || ||| | |||| ||||| || Sbjct 17772921 ACGAACATCTCAACAAACTCAGAACCTGAGATGGAAAAGAAAGGTACACCAGCTTCACCA 17772862 Query 289183 GCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCC 289242 || | ||| | |||| || || ||||| || ||||| || || | | ||||| || Sbjct 17772861 GCAATGGCCTTTGCCAAGAGGGTTTTACCAGTACCAGGAGGACCAACAAGGAGAACACCT 17772802 Query 289243 TTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATT 289302 || || | || ||| | | | | ||||||| |||| | ||| || || | | Sbjct 17772801 TTCGGGATCCGAGCACCAACCGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACT 17772742 Query 289303 TCC-TCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 ||| | ||| || | || || ||||| || || |||||| ||||||| Sbjct 17772741 TCCATGAAG-TCTTGCTTGGCTTCATCGACGCCAGCAACATCATCAAAAGT 17772692 >seq10 Length=22354415 Score = 84.2 bits (92), Expect = 6e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 408943 AGTTCTATTAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCGA 409002 ||||| || ||||||||||||||| || |||||||||||||||| |||| |||||||| Sbjct 14498331 AGTTCCCGTAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGA 14498390 Query 409003 GTCCCACATAGAACATTTT 409021 | ||| | ||||||||| Sbjct 14498391 GGCCCGCCGGGAACATTTT 14498409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471633813216402