Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq9 219 5e-52 seq14 179 4e-40 seq28 122 1e-22 seq8 111 2e-19 seq17 93.3 5e-14 seq3071 91.5 2e-13 seq1581 89.7 6e-13 seq390 84.2 2e-11 >seq9 Length=62778564 Score = 219 bits (242), Expect = 5e-52 Identities = 437/643 (68%), Gaps = 7/643 (1%) Strand=Plus/Minus Query 159674 CAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTCATCTACCC 159733 |||| | || | ||||||||||| |||||||||||||| ||||| || || || || Sbjct 56234949 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 56234890 Query 159734 ATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATT 159793 | | ||||| || |||||| || | || ||||| || || || || ||| |||| Sbjct 56234889 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 56234830 Query 159794 CCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATATGATGGGAGT 159853 | | | || | ||||| ||||| || ||| | | ||| | || ||| |||||||| | Sbjct 56234829 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGATGGGAAT 56234770 Query 159854 TGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGTAGAGAACAC 159913 ||| ||| |||| || | || || | | || || |||| | ||||||||| || | Sbjct 56234769 TGCCGGTGTACTTGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGA-AATAT 56234711 Query 159914 ACTGTA--TGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAACTCAAGAG 159971 | || |||| |||| || ||||||| || || ||| | ||| ||||| Sbjct 56234710 TTTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCC 56234651 Query 159972 GAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCG 160031 || || ||||| || |||||||| || |||||||| ||||| | ||||| || ||| Sbjct 56234650 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCT 56234591 Query 160032 TTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGG 160091 ||||| || || | ||| | || ||||| ||||| ||||| || || | ||| | || Sbjct 56234590 TTTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGG 56234531 Query 160092 ACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACGATTTCGTAAGT 160151 | || ||| || | || || ||| | || || |||| || | ||| | Sbjct 56234530 ATGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCC 56234471 Query 160152 CAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTA 160211 ||||| || | ||||| |||||||| | | |||| || ||||| || ||||| || || Sbjct 56234470 CAAGAAATTTGTGCAGCGGAAGATCC-GGACTTGAAACTTTCTATACTAAAAATATTCTT 56234412 Query 160212 TTGAACGAAGGACTACGTGCATGGTTGGCACCT---GCTGATCAACCCCATGAAAACTTT 160268 || |||||||| | || | ||| |||| || | | | || || ||||||||| || Sbjct 56234411 TTAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATT 56234352 Query 160269 ATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 160311 || ||| | || || || || || | || | | | ||||||| Sbjct 56234351 ATATTCACTGAGGAGGTTTTACCACGTGGAAGCACTCTTTAAT 56234309 Score = 129 bits (142), Expect = 6e-25 Identities = 140/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 158750 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGT 158809 ||| | || ||||| || || |||||||| | || | ||||||||| ||||| ||| Sbjct 18477112 TACGTCCTCGACGCTGCGGAGGAAGCAGGGATCGACTTGCCTTACTCTTGCCGTGCCGGT 18477053 Query 158810 GCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCG 158869 ||||||| |||||||||||| |||| ||||| |||||| ||| ||| ||| Sbjct 18477052 TCTTGCTCGAGCTGTGCAGGTAAAGTTGTGTCTGGTTTTGTTGACCAGTCTGACCAGAGT 18476993 Query 158870 TTCTTAGACGATGATCAGATTGCAGCAGGATTTGTTCTTACGTGTGTAGCATATCCAACA 158929 ||| | || ||||| |||||||| ||||| |||||||| || |||| || ||||| || Sbjct 18476992 TTCCTCGATGATGACCAGATTGCTGCAGGGTTTGTTCTCACCTGTGCGGCTTATCCTACT 18476933 Query 158930 TCTGAT 158935 |||||| Sbjct 18476932 TCTGAT 18476927 Score = 82.4 bits (90), Expect = 8e-11 Identities = 131/184 (71%), Gaps = 3/184 (2%) Strand=Plus/Plus Query 157798 TGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAG-TGGCTGTATAACG 157856 |||| | || || || |||||||| |||| ||||| ||||||| ||||| || || Sbjct 10190845 TGGTTTGCATTTTTACGCCATCTGG-AAGCTGCATCCGTTGATGAAATGGCTATACAAAC 10190903 Query 157857 GTGGTC-CTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGCATACATGGGA 157915 ||||| ||| |||| | || | ||||| | ||||| | | || ||||| Sbjct 10190904 GTGGTTGCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGT 10190963 Query 157916 CGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCT 157975 ||||||||||||||| | |||| | |||||||| || ||||| ||| |||||||| Sbjct 10190964 CGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCA 10191023 Query 157976 GCTC 157979 |||| Sbjct 10191024 GCTC 10191027 >seq14 Length=28343526 Score = 179 bits (198), Expect = 4e-40 Identities = 195/259 (75%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 157917 GTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTG 157976 |||||||||||||| | | || | ||||| || || ||||| ||| |||||||| | Sbjct 20845009 GTGAGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATTGCTGTTGCATATTCAG 20845068 Query 157977 CTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCT 158036 ||| || || | || || ||| ||| | ||| || | | |||||| ||| | Sbjct 20845069 ATCCTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATTGATCAAGGAAGTTTTT 20845128 Query 158037 CCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAG 158096 | ||| ||||||||| || |||||||||||||| |||| ||| ||||||||||| | | Sbjct 20845129 CTGATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTCCAAACTG 20845188 Query 158097 AACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGAT 158156 | |||||||| ||||||||||| || || ||| | ||||| ||||| |||||||| || | Sbjct 20845189 AGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCT 20845248 Query 158157 CTCTTTTCTCTGCTATGCA 158175 ||||||| ||||||||| Sbjct 20845249 CTCTTTTTAGTGCTATGCA 20845267 Score = 138 bits (152), Expect = 1e-27 Identities = 142/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 158750 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGT 158809 ||| | || ||||| || || ||||| ||| | || | ||||||||| ||||||||| Sbjct 23727187 TACGTCCTCGACGCTGCTGAGGAAGCCGGAATCGACTTGCCTTACTCTTGCCGTGCTGGT 23727246 Query 158810 GCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCG 158869 ||||||| |||||||||||| |||| |||||| ||||||| ||| ||| ||| Sbjct 23727247 TCTTGCTCCAGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGT 23727306 Query 158870 TTCTTAGACGATGATCAGATTGCAGCAGGATTTGTTCTTACGTGTGTAGCATATCCAACA 158929 ||| | || ||||| |||||||| | |||||| ||||| || |||| || ||||| || Sbjct 23727307 TTCCTCGATGATGACCAGATTGCTGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTACT 23727366 Query 158930 TCTGAT 158935 |||||| Sbjct 23727367 TCTGAT 23727372 >seq28 Length=1539140 Score = 122 bits (134), Expect = 1e-22 Identities = 132/175 (75%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 158750 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGT 158809 ||| | || ||||| || || ||||| ||| | || | ||||||||| ||||||||| Sbjct 841686 TACGTCCTTGACGCTGCTGAGGAAGCCGGAATCGACTTGCCTTACTCTTGCCGTGCTGGT 841627 Query 158810 GCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCG 158869 | ||||| |||||||||||| |||| |||||| ||||||| ||| ||| ||| Sbjct 841626 TCCTGCTCGAGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGT 841567 Query 158870 TTCTTAGACGATGATCAGATTGCAGCAGGATTTGTTCTTACGTGTGTAGCATATC 158924 ||| | || ||||| |||||||| | |||||| ||||| || |||| || |||| Sbjct 841566 TTCCTCGATGATGACCAGATTGCGGAAGGATTCGTTCTCACTTGTGCGGCTTATC 841512 >seq8 Length=29345952 Score = 111 bits (122), Expect = 2e-19 Identities = 105/132 (80%), Gaps = 3/132 (2%) Strand=Plus/Plus Query 158044 TATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAA 158103 ||||||||| | |||||||||||||| |||| ||| |||||||||| || || ||||| Sbjct 6844674 TATGCCTCTAGA-ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAA 6844732 Query 158104 CATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTT 158163 ||| |||||||||| ||| ||| | ||||| ||||| |||||||| || || || || Sbjct 6844733 CATTCTTATGCACCATTTC--AATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATT 6844790 Query 158164 CTCTGCTATGCA 158175 ||||||||| Sbjct 6844791 TAGTGCTATGCA 6844802 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 158417 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 158476 ||||| || |||||||| |||||||| || | ||||| |||| || ||||| || || Sbjct 10479929 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTTTTAAT 10479870 Query 158477 ACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGA 158529 || ||||| ||| | | ||||| ||| |||||||||||||||||| |||| Sbjct 10479869 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGTATGA 10479817 >seq17 Length=44223734 Score = 93.3 bits (102), Expect = 5e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 158750 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGT 158809 ||| | || ||||| || || |||||||| | ||| | |||||| || || || || Sbjct 42227442 TACGTCCTCGACGCTGCGGAGGAAGCAGGTATCGATTTGCCTTACTCGTGCCGCGCAGGA 42227383 Query 158810 GCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCG 158869 ||||||| || ||||| ||| | || ||||| |||| |||| || ||| Sbjct 42227382 TCTTGCTCAAGCTGCGCAGGGAAAGTCGTCTCTGGCTTCATTGACCAGACGGACCAGAGC 42227323 Query 158870 TTCTTAGACGATGATCAGATTGCAGCAGGATTTGTTCTTACGTGTGTAGCATATCCAACA 158929 |||||||||||||| ||||| | ||| | ||| ||||| ||||| || || ||||| Sbjct 42227322 TTCTTAGACGATGACCAGATGAGCGAAGGGTATGTCCTTACCTGTGTGGCTTACCCAACT 42227263 Query 158930 TCTGAT 158935 |||||| Sbjct 42227262 TCTGAT 42227257 >seq3071 Length=6037 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 158417 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 158476 ||||| || |||||||| |||||||| || | ||||| |||| || ||||| || || Sbjct 1741 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTTTTAAT 1682 Query 158477 ACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGA 158529 || ||||| ||| | | ||||| ||| |||||||||||||||||| |||| Sbjct 1681 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGTATGA 1629 >seq1581 Length=16492 Score = 89.7 bits (98), Expect = 6e-13 Identities = 124/172 (72%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 158792 TACTCTTGTCGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTT 158851 ||||| || ||||| || |||||||| || ||||||||||| || |||||| | ||| Sbjct 16125 TACTCGTGCCGTGCGGGAGCTTGCTCGAGCTGCGCAGGTAAAATAGTGTCTGGATCCGTT 16066 Query 158852 GATCAGAGTGATCAGTCGTTCTTAGACGATGATCAGATTGCAGC--AGGATTTGTTCTTA 158909 || ||| || ||| || |||||||||| ||||| |||| ||| |||||||| | Sbjct 16065 GACCAGTCGGACCAGAGCTTTTTAGACGATGGCCAGAT--CAGCGAAGGGTTTGTTCTCA 16008 Query 158910 CGTGTGTAGCATATCCAACATCTGATTGTGTTGTTGTTACTGATCAAGAGGA 158961 |||| | || ||||| |||||| ||| || || ||||||| || Sbjct 16007 CGTGCATCGCTCTCCCAACTTCTGATGTCGTTATTACAACCCATCAAGAAGA 15956 >seq390 Length=101491 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 159587 TTTTGTGGCACTCCACGGTGCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACT 159646 |||||| || ||||| ||||| ||||| |||| ||||| ||| | ||||| |||||||| Sbjct 2251 TTTTGTTGCTCTCCATGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACT 2310 Query 159647 GGCACG-TCTCATTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGC 159703 || || ||| | | | || ||||| ||||| || || ||||||||||| ||||| Sbjct 2311 TGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGC 2367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548307594288720