Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq13 98.7 8e-16 seq10 98.7 8e-16 seq9 96.9 3e-15 seq18 93.3 3e-14 >seq13 Length=83567108 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || || ||| | || || || ||||| ||| |||| ||| | Sbjct 62923659 ATGCAGATCTTCGTTAAGACTCTCACAGGAAAGACCATCACCCTCGAGGTGGAAAACTCC 62923718 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || ||| |||||| || || |||||| | ||| |||||| Sbjct 62923719 GACACGATCGACAACGTTAAAGCCAAGATTCAGGATAAGGAAGGCATTCCCCCGGATCAG 62923778 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| ||||| | || || || |||||||| || | ||| || |||| ||||||||| Sbjct 62923779 CAAAGGCTTATCTTCGCCGGGAAGCAGCTGGAAGACGGCAGGACGTTGGCCGATTACAAC 62923838 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || |||||||| | ||| |||| | || || || || || Sbjct 62923839 ATCCAGAAGGAATCTACTCTCCACTTGGTTCTCAGGCTCCGTGGTGG 62923885 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || || || | ||||| || ||||| || | || |||| | Sbjct 62924115 ATGCAGATTTTCGTTAAGACACTGACCGGGAAGACCATCACTCTGGAGGTGGAGAGTTCA 62924174 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | | || || ||||| ||||| |||||| | || || || Sbjct 62924175 GACACTATAGACAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATTCCTCCAGACCAG 62924234 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||||| || | ||| || || ||||| ||||| | ||||||| |||| ||||||||| Sbjct 62924235 CAGAGACTCATCTTTGCCGGAAAGCAGCTAGAGGACGGCAGAACACTGGCTGATTACAAC 62924294 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| ||||| |||||| | ||| |||| || | || ||||| || Sbjct 62924295 ATTCAGAAAGAGTCTACGCTTCACTTGGTCTTGCGTCTCCGAGGTGG 62924341 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| ||||| || || ||||||||||| | || |||| | Sbjct 62923887 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAAACCATTACTTTGGAGGTGGAGAGTTCA 62923946 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | || ||| ||||||| || || || || | || || || Sbjct 62923947 GATACCATCGACAATGTTAAAGCGAAGATTCAGGATAAGGAGGGTATTCCTCCTGACCAG 62924006 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | || | ||| || || || || || |||| | || | || || |||||| Sbjct 62924007 CAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGGCGTACTCTTGCTGACTACAAC 62924066 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| |||||||| | ||| |||| ||| | || || ||||| Sbjct 62924067 ATTCAAAAGGAATCTACACTTCACTTGGTCTTACGTCTACGTGGGGG 62924113 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCC 110328 |||||||| || ||||| ||||| |||| || || || || ||| | || || | | Sbjct 48378293 AAAATGCAGATCTTTGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTCGAATCA 48378234 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 | | || || ||| | | || ||| ||||| ||||| |||||| | || ||| Sbjct 48378233 TCA-GACACGATCGACAATGTCAAAGCCAAGATCCAGGACAAGGAAGGCATCCCACCGGA 48378175 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 ||| || |||| || | || || || |||||||| || | || ||| | |||||||| Sbjct 48378174 TCAGCAGCGACTGATCTTCGCCGGGAAGCAGCTGGAAGACGGGAGGACACTCGCGGATTA 48378115 Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGA 110500 |||||| || || || || ||| | ||| |||| | | ||| |||| ||| Sbjct 48378114 CAACATCCAGAAGGAGTCGACGCTTCACCTGGTTCTCCGTCTGAGAGGAGGA 48378063 >seq10 Length=22354415 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTG 110330 ||||||||||||||| || ||||| || ||||| || |||||| | ||| || || Sbjct 21870338 AATGCAAATATTTGTGAAGACTTTGACAGGCAAGACTATTACCTTGGAAGTTGAAAGCTC 21870397 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || || ||| | | || || |||||| ||||| ||||| | || ||| | Sbjct 21870398 A-GACACAATCGACAATGTGAAGGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGACC 21870456 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 |||| ||||| || | || ||||||||||| ||||||| | || | || ||||||| Sbjct 21870457 AACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGCACGCTTGCAGATTACA 21870516 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||||| || || || || |||| |||| Sbjct 21870517 ACATTCAGAAGGAGTCGACTCTGCATTTGGT 21870547 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 ||||| || |||||||| || || ||||| ||||| |||||| | || ||| || Sbjct 21869883 ATGCAGATCTTTGTCAAGACCTTGACCGGTAAAACAATTACCTTGGAGGTTGAGAGCTCT 21869942 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || | | | | || ||| |||||| || || |||||| | || || Sbjct 21869943 GAC---ACGATTGACAACGTCAAAGCAAAGATTCAGGAGAAGGAAGGCATCCCACCAGAC 21869999 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || ||||| || | || || || ||||||||||||| | || | ||||||||| Sbjct 21870000 CAGCAGAGACTCATCTTCGCAGGGAAGCAGCTGGAGGATGGTCGCACTCTCGCGGATTAC 21870059 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| ||||| || || ||| | || | ||| | | ||| |||| || Sbjct 21870060 AACATCCAAAAGGAGTCCACGCTCCATCTTGTGCTTCGTCTGAGAGGTGG 21870109 >seq9 Length=62778564 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34450 TGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCAAGCGCC 34509 ||||| |||||||| || || |||||||| || | |||| || || | || | ||| Sbjct 36342209 TGCGCACCCAGCTCACAGCCAAAGTACTTGGTGGTGTAAGCAGCAGGTCTCCCCAAGGCC 36342150 Query 34510 TTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTTCGACC 34569 ||||||||||| |||||| || | ||||||||||||||| || | ||||||| | Sbjct 36342149 TTGGCGATTTCAACCATGTTAACCACATTAGTCTTGATGCCGTTACCTCTACCTTCGATC 36342090 Query 34570 TTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTC 34610 |||| || | |||||| ||||| | |||||| || || Sbjct 36342089 TTGGTCATCATCCTCGGCATCTTGTACCTGTAGAAGGCATC 36342049 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| || | ||||| || |||||||| | ||| |||| | | Sbjct 30454745 ATGCAGATCTTTGTCAAGACCCTTACCGGGAAGACCATTACTCTAGAAGTGGAGAGTTCC 30454804 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | | || ||| || || |||||||||||| | || || || Sbjct 30454805 GACACTATTGACAACGTGAAAGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 30454864 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | || | ||| || || ||||| ||||||| | || |||| || |||||| Sbjct 30454865 CAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGATGGTCGTACCTTGGCTGACTACAAC 30454924 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || || || | ||| |||||||| | || || || || Sbjct 30454925 ATTCAGAAGGAGTCGACTCTTCACTTGGTGTTACGTCTCCGTGGTGG 30454971 >seq18 Length=77673080 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 |||||||| ||||| || ||||| || ||||| || || ||| | ||| ||| || | Sbjct 62463572 ATGCAAATCTTTGTGAAGACTTTGACAGGCAAGACTATAACCTTGGAAGTTGAGAGCTCA 62463631 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || ||| | | || || |||||| ||||| ||||| | || ||| || Sbjct 62463632 -GACACAATCGACAATGTGAAGGCTAAGATTCAGGACAAGGAAGGGATCCCTCCGGACCA 62463690 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| ||||| || | || ||||||||||| ||||||| || || |||| |||||||| Sbjct 62463691 ACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTAGGACTTTGGCTGATTACAA 62463750 Query 110452 CATTCAAAAAGAATCTAC 110469 ||| || || || || || Sbjct 62463751 CATCCAGAAGGAGTCGAC 62463768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412792562932778