Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq9 250 3e-61 seq14 165 9e-36 seq28 116 4e-21 seq8 105 7e-18 seq3071 91.5 2e-13 seq1581 82.4 8e-11 >seq9 Length=62778564 Score = 250 bits (276), Expect = 3e-61 Identities = 431/623 (69%), Gaps = 5/623 (1%) Strand=Plus/Minus Query 159155 CAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCC 159214 |||| | || | ||||||||||| |||||||||||||| ||||| || || || || Sbjct 56234949 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 56234890 Query 159215 ACTTGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCCGCAATATTCAGGTT 159274 ||| ||||| || |||||| || | || ||||| || || || ||||| | || Sbjct 56234889 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 56234830 Query 159275 CCTACTCTTCCTACAAGGGTTCCACAATTGGACACTAAACCCCTTCCATATGATGGGAGT 159334 | | ||||| | |||||||| || |||||| |||| || | || ||| |||||||| | Sbjct 56234829 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGATGGGAAT 56234770 Query 159335 TGCTGGTATCCTAGGTGGAGCACTTCTATCTGCTATTCATGGGGTCACAGTTGAAA-ATA 159393 ||| ||| | || || | || || ||| |||||| |||| | || || |||| || Sbjct 56234769 TGCCGGTGTACTTGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGAAATATT 56234710 Query 159394 CATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCAACTCAAGAGG 159453 |||| || |||| || ||||| | || || ||| | ||| ||||| | Sbjct 56234709 TTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCCG 56234650 Query 159454 AGGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGT 159513 | || |||||||| |||||||| || |||||||| ||||| | ||||| || ||| | Sbjct 56234649 AAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCTT 56234590 Query 159514 TTTCTAACAAGCGGTGGCTTCATTTCTTTATGTTGTTTGTGCCTGTTATGGGTCTATGGA 159573 |||| || || | ||| | || ||||||||||| ||||| || || | ||| || ||| Sbjct 56234589 TTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGGA 56234530 Query 159574 CATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTC 159633 | ||| || | ||||| ||| | || || |||| || | ||| | | Sbjct 56234529 TGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCCC 56234470 Query 159634 AAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAAACGTTCTACACCAAGAACATTCTTC 159693 |||| || | ||||| |||||||| | | ||||||| ||||| || || || |||||| Sbjct 56234469 AAGAAATTTGTGCAGCGGAAGATCC-GGACTTGAAACTTTCTATACTAAAAATATTCTTT 56234411 Query 159694 TGAATGAAGGACTACGTGCTTGGTTGGCACCT---GCTGATCAACCCCATGAAAACTTCA 159750 | || ||||| | || ||||| |||| || | | | || || ||||||||| | | Sbjct 56234410 TAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATTA 56234351 Query 159751 TCTTCCCAGAAGAAGTTCTACCA 159773 | ||| | || || ||| ||||| Sbjct 56234350 TATTCACTGAGGAGGTTTTACCA 56234328 Score = 120 bits (132), Expect = 3e-22 Identities = 138/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 158222 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAACTACTCTTGTCGTGCTGGT 158281 ||| | || ||||| || || |||||||| | || | |||||||| ||||| ||| Sbjct 18477112 TACGTCCTCGACGCTGCGGAGGAAGCAGGGATCGACTTGCCTTACTCTTGCCGTGCCGGT 18477053 Query 158282 GCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCG 158341 ||||||| |||||||||||| |||| ||||| |||||| ||| ||| ||| Sbjct 18477052 TCTTGCTCGAGCTGTGCAGGTAAAGTTGTGTCTGGTTTTGTTGACCAGTCTGACCAGAGT 18476993 Query 158342 TTCCTAGACGATGATCAAATCGCAGCAGGATTTGTTCTTACGTGTGTAGCATATCCAACA 158401 ||||| || ||||| || || || ||||| |||||||| || |||| || ||||| || Sbjct 18476992 TTCCTCGATGATGACCAGATTGCTGCAGGGTTTGTTCTCACCTGTGCGGCTTATCCTACT 18476933 Query 158402 TCTGAT 158407 |||||| Sbjct 18476932 TCTGAT 18476927 Score = 104 bits (114), Expect = 3e-17 Identities = 263/381 (69%), Gaps = 17/381 (4%) Strand=Plus/Plus Query 157078 AACCGTTTGTATGTTGGTTGGTTCGGTGTGCTTATGATTCCAACATTGCTTG-CAGCAAC 157136 |||||||| ||||| ||||| ||||| | ||||| || || || ||| | || || Sbjct 10190652 AACCGTTTTACAGTTGGATGGTTTGGTGTTTTGATGATCCCTACCTTAATTGACCGCTAC 10190711 Query 157137 TATCTGCTTCATTGTTGCATTCGTAGCAGCA-CCTCCCGTTGATATCGACGGTATTCGCG 157195 | || | || || || |||| | || || |||| || ||||| || ||||| | | Sbjct 10190712 T-TCCGTTT--TTATTAGATTCATTGCTGCTTCCTCTAGTAGATATTGAGTGTATT-GTG 10190767 Query 157196 AACCAGTTG-CTGGTTCTCTCATGTATGGC--AACAACATCATCTCTGGTGCAGTTGTTC 157252 |||| ||| ||||| |||| | || || ||||| || | || |||||| || || Sbjct 10190768 AACCTGTTTTCTGGT-CTCTTCTTTAAGGTGAAACAATATTAGTTCCGGTGCA-TTATTT 10190825 Query 157253 CTTCT-TCAAACG-CAATC-GGTCTTCACTTCTACCCCATCTGGGAAGCAGCATCACTTG 157309 || || || | | | || ||| | || || ||| |||||||| |||| ||||| ||| Sbjct 10190826 CTACTGTCTCAGGGCTATGTGGTTTGCATTTTTACGCCATCTGG-AAGCTGCATCCGTTG 10190884 Query 157310 ATGAG-TGGCTTTACAACGGTGGTC-CTTTCCAACTGGTAGTCTTTCACTTCCTGATCGG 157367 |||| ||||| ||||| ||||| ||| |||| | || | ||||| | | || Sbjct 10190885 ATGAAATGGCTATACAAACGTGGTTGCTTATGAACTAATTGTTCTACACTTTTTACTTGG 10190944 Query 157368 CATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCGTTTAGGTATGCGCCCCTG 157427 | | |||||||| ||||||||||||||| || |||| | |||||||| || || Sbjct 10190945 TGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTG 10191004 Query 157428 GATCTGTGTTGCCTACTCGGC 157448 ||| |||||| || || || Sbjct 10191005 GATTGCTGTTGCATATTCAGC 10191025 >seq14 Length=28343526 Score = 165 bits (182), Expect = 9e-36 Identities = 198/269 (74%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 157378 TATATGGGACGTGAGTGGGAACTTTCTTACCGTTTAGGTATGCGCCCCTGGATCTGTGTT 157437 ||||||| |||||||||||||| || | || | ||||| || || ||||| |||| Sbjct 20844999 TATATGGATTGTGAGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATTGCTGTT 20845058 Query 157438 GCCTACTCGGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAA 157497 || || || | || || || |||| | || || ||| | ||| || | | |||| Sbjct 20845059 GCATATTCAGATCCTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATTGATCAA 20845118 Query 157498 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTCGTC 157557 || ||| || ||| ||||||||| || |||||||||||||| |||| |||| | || Sbjct 20845119 GGAAGTTTTTCTGATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTA 20845178 Query 157558 TTCCAGGCAGAGCACAATATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTA 157617 ||||| | |||||||| ||||||||||| || || |||||| | || || ||||| ||| Sbjct 20845179 TTCCAAACTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 20845238 Query 157618 TTCGGTGGATCTTTGTTCTCTGCTATGCA 157646 ||||| || ||| | || ||||||||| Sbjct 20845239 TTCGGCGGCTCTCTTTTTAGTGCTATGCA 20845267 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 158180 ACTCCTGAGGGAGAAACAGTTATCCAGTGTGAAGAGGATCAATACATTCTAGACGCAGCA 158239 ||||| || |||||| || | |||| || || || ||| | || ||||| || Sbjct 23727145 ACTCCAGAAGGAGAACAAGAGGTTGAGTGCGACGACGACGTCTACGTCCTCGACGCTGCT 23727204 Query 158240 GAAGAAGCAGGAGTTGATATTAACTACTCTTGTCGTGCTGGTGCTTGCTCTTCATGTGCA 158299 || ||||| ||| | || | |||||||| ||||||||| ||||||| |||||| Sbjct 23727205 GAGGAAGCCGGAATCGACTTGCCTTACTCTTGCCGTGCTGGTTCTTGCTCCAGCTGTGCA 23727264 Query 158300 GGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCGTTCCTAGACGATGATCAA 158359 |||||| |||| |||||| ||||||| ||| ||| ||| ||||| || ||||| || Sbjct 23727265 GGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCCTCGATGATGACCAG 23727324 Query 158360 ATCGCAGCAGGATTTGTTCTTACGTGTGTAGCATATCCAACATCTGAT 158407 || || | |||||| ||||| || |||| || ||||| || |||||| Sbjct 23727325 ATTGCTGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTACTTCTGAT 23727372 >seq28 Length=1539140 Score = 116 bits (128), Expect = 4e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 158180 ACTCCTGAGGGAGAAACAGTTATCCAGTGTGAAGAGGATCAATACATTCTAGACGCAGCA 158239 |||||||| ||||| || | |||| || || || ||| | || ||||| || Sbjct 841728 ACTCCTGAAGGAGAGCAAGAGGTTGAGTGCGACGACGACGTCTACGTCCTTGACGCTGCT 841669 Query 158240 GAAGAAGCAGGAGTTGATATTAACTACTCTTGTCGTGCTGGTGCTTGCTCTTCATGTGCA 158299 || ||||| ||| | || | |||||||| ||||||||| | ||||| |||||| Sbjct 841668 GAGGAAGCCGGAATCGACTTGCCTTACTCTTGCCGTGCTGGTTCCTGCTCGAGCTGTGCA 841609 Query 158300 GGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCGTTCCTAGACGATGATCAA 158359 |||||| |||| |||||| ||||||| ||| ||| ||| ||||| || ||||| || Sbjct 841608 GGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCCTCGATGATGACCAG 841549 Query 158360 ATCGCAGCAGGATTTGTTCTTACGTGTGTAGCATATC 158396 || || | |||||| ||||| || |||| || |||| Sbjct 841548 ATTGCGGAAGGATTCGTTCTCACTTGTGCGGCTTATC 841512 >seq8 Length=29345952 Score = 105 bits (116), Expect = 7e-18 Identities = 105/132 (80%), Gaps = 3/132 (2%) Strand=Plus/Plus Query 157515 TATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAA 157574 ||||||||| | |||||||||||||| |||| |||| | || |||||||| |||||||| Sbjct 6844674 TATGCCTCTAGA-ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAA 6844732 Query 157575 TATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTT 157634 ||||||||||| || || || ||| | || || ||||| |||||||| || || | || Sbjct 6844733 CATTCTTATGCA-CCATTTCA-ATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATT 6844790 Query 157635 CTCTGCTATGCA 157646 ||||||||| Sbjct 6844791 TAGTGCTATGCA 6844802 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 157888 AACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 157947 ||||| || |||||||| |||||||| || | ||||| |||| || ||||| || || Sbjct 10479929 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTTTTAAT 10479870 Query 157948 ACCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGA 158000 || ||||| ||| | | ||||| ||| |||||||||||||||||| |||| Sbjct 10479869 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGTATGA 10479817 >seq3071 Length=6037 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 157888 AACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 157947 ||||| || |||||||| |||||||| || | ||||| |||| || ||||| || || Sbjct 1741 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTTTTAAT 1682 Query 157948 ACCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGA 158000 || ||||| ||| | | ||||| ||| |||||||||||||||||| |||| Sbjct 1681 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGTATGA 1629 >seq1581 Length=16492 Score = 82.4 bits (90), Expect = 8e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 158264 TACTCTTGTCGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTT 158323 ||||| || ||||| || |||||||| || ||||||||||| || |||||| | ||| Sbjct 16125 TACTCGTGCCGTGCGGGAGCTTGCTCGAGCTGCGCAGGTAAAATAGTGTCTGGATCCGTT 16066 Query 158324 GATCAGAGTGATCAGTCGTTCCTAGACGATGATCAAATCGCAGCAGGATTTGTTCTTACG 158383 || ||| || ||| || ||||||||| || ||| | ||| |||||||| ||| Sbjct 16065 GACCAGTCGGACCAGAGCTTTTTAGACGATGGCCAGATCAGCGAAGGGTTTGTTCTCACG 16006 Query 158384 TGTGTAGCATATCCAACATCTGATTGTGTTGTTGTTACTGATCAAGAGGA 158433 || | || ||||| |||||| ||| || || ||||||| || Sbjct 16005 TGCATCGCTCTCCCAACTTCTGATGTCGTTATTACAACCCATCAAGAAGA 15956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545207172043680