Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq9 259 6e-64 seq14 185 1e-41 seq28 127 2e-24 seq1 118 1e-21 seq16 114 2e-20 seq11 113 5e-20 seq8 107 2e-18 >seq9 Length=62778564 Score = 259 bits (286), Expect = 6e-64 Identities = 427/612 (70%), Gaps = 7/612 (1%) Strand=Plus/Minus Query 179336 CTGGTCCTATTGCCGTATTCGTTAGTGTATTTCTCATCTACCCACTTGGACAATCCAGTT 179395 ||||||| ||||| || || ||| || ||||| || || ||||| || ||||| || Sbjct 56234932 CTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCCACTAGGTCAATCTGATT 56234873 Query 179396 GGTTCTTTGCGCCATCGTTTGGTGTTGCGGCGATCTTTAGATTCCTACTTTTCTTACAAG 179455 ||||||||| ||| |||||||| ||||| || ||| ||||| | || || || |||| Sbjct 56234872 GGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAG 56234813 Query 179456 GTTTCCACAACTGGACACTCAACCCCTTTCACATGATGGGAGTTGCAGGTATCCTGGGTG 179515 | || || || ||| |||| || | ||||| |||||||| |||| ||| | || || | Sbjct 56234812 GGTTTCATAATTGGGCACTGAATTCATTTCATTTGATGGGAATTGCCGGTGTACTTGGCG 56234753 Query 179516 GTGCTCTGCTCTCTGCTATTCATGGAGTAACTGTAGAGAATACATTGTA--TGAAGATGG 179573 |||||| | | |||||| |||| | |||||||| |||| || || |||| |||| Sbjct 56234752 CGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGA-AATATTTTTTATCTGAAAATGG 56234694 Query 179574 AGAACAAGCAAACACATTTAAAGCGTTCGACTCTACGCAAGAGGAGGAGACCTATTCTAT 179633 || ||||| | ||| || || || | | |||| || || || ||||| || Sbjct 56234693 TGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCCGAAGAAACTTATTCAAT 56234634 Query 179634 GGTTACAGCGAACCGTTTTTGGTCGCAGATCTTCGGGGTTCCGTTTAGCAATAAGCGTTG 179693 ||| || || ||||| |||||||| | ||||| |||| | | ||| |||||| | ||| Sbjct 56234633 GGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCTTTTTCCAATAAACATTG 56234574 Query 179694 GTTCCACTTCTTTAAGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCAT 179753 ||| || ||||||| | | ||||| || || | ||| | || | | || ||| || Sbjct 56234573 GTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGGATGAGTGCTCTTGTAAT 56234514 Query 179754 CATTGGGCTAGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATCAGAGCAGC 179813 | || |||||| | || || |||| |||| || | ||||| || | ||||| Sbjct 56234513 AGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCCCAAGAAATTTGTGCAGC 56234454 Query 179814 AGAAGATCCTGAGTTCGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTACG 179873 |||||||| || || || || |||||||| || || |||||| | || ||||| | || Sbjct 56234453 GGAAGATCCGGACTT-GAAACTTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCG 56234395 Query 179874 TGCTTGGTTGGCACCT---GCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGT 179930 ||||| |||| || | | | || || ||||||||| | || ||| | || || || Sbjct 56234394 CACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATTATATTCACTGAGGAGGT 56234335 Query 179931 CCTACCTAGTGG 179942 |||| |||| Sbjct 56234334 TTTACCACGTGG 56234323 Score = 113 bits (124), Expect = 5e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 ||| |||| || ||||| || |||||||| || || | || ||||| || ||||| ||| Sbjct 18477112 TACGTCCTCGACGCTGCGGAGGAAGCAGGGATCGACTTGCCTTACTCTTGCCGTGCCGGT 18477053 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 | || || | |||||| |||||| | || || ||| || |||||||||||| | Sbjct 18477052 TCTTGCTCGAGCTGTGCAGGTAAAGTTGTGTCTGGTTTTGTTGACCAGTCTGACCAGAGT 18476993 Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCACA 138717 ||||| ||||||||||| ||||| ||||| ||| | | || || | || || || || Sbjct 18476992 TTCCTCGATGATGACCAGATTGCTGCAGGGTTTGTTCTCACCTGTGCGGCTTATCCTACT 18476933 Query 138718 TCCGATTGTATAATTGAAAC 138737 || ||| || ||||| || Sbjct 18476932 TCTGATGTTACCATTGAGAC 18476913 >seq14 Length=28343526 Score = 185 bits (204), Expect = 1e-41 Identities = 205/271 (76%), Gaps = 2/271 (1%) Strand=Plus/Plus Query 177885 TATATGGGACGTGAGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTT 177944 ||||||| |||||||||||||| | | |||| ||||| || || ||||| |||| Sbjct 20844999 TATATGGATTGTGAGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATTGCTGTT 20845058 Query 177945 GCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCGGTCA 178003 ||||| || | ||||||||| | || | || ||||| | ||| || | | ||| Sbjct 20845059 GCATATTCAGATCCTGTTGCAACTGCTATTGGTGT-TTTCTTGATCTGCCCAATTGATCA 20845117 Query 178004 AGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGT 178063 ||| || || ||| ||||||||| || |||||||||||||| |||| ||| |||| Sbjct 20845118 AGGAAGTTTTTCTGATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGT 20845177 Query 178064 ATTCCAAGCAGAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGGT 178123 ||||||| | || ||||| || ||||||||||| || |||||| | ||||| ||||| || Sbjct 20845178 ATTCCAAACTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 20845237 Query 178124 ATTCGGTGGATCTCTTTTCTCTGCTATGCAT 178154 |||||| || |||||||| |||||||||| Sbjct 20845238 ATTCGGCGGCTCTCTTTTTAGTGCTATGCAT 20845268 Score = 127 bits (140), Expect = 2e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 ||| |||| || |||||||| ||||| || || || | || ||||| || ||||||||| Sbjct 23727187 TACGTCCTCGACGCTGCTGAGGAAGCCGGAATCGACTTGCCTTACTCTTGCCGTGCTGGT 23727246 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 | || || | |||||| |||||| | || ||| |||| || |||||||||||| | Sbjct 23727247 TCTTGCTCCAGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGT 23727306 Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCACA 138717 ||||| ||||||||||| ||||| | |||||| | | ||||| | || || || || Sbjct 23727307 TTCCTCGATGATGACCAGATTGCTGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTACT 23727366 Query 138718 TCCGATTGTATAATTGAAAC 138737 || ||| || ||||| || Sbjct 23727367 TCTGATGTTACCATTGAGAC 23727386 >seq28 Length=1539140 Score = 127 bits (140), Expect = 2e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 ||| ||||||| |||||||| ||||| || || || | || ||||| || ||||||||| Sbjct 841686 TACGTCCTTGACGCTGCTGAGGAAGCCGGAATCGACTTGCCTTACTCTTGCCGTGCTGGT 841627 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 | || || | |||||| |||||| | || ||| |||| || |||||||||||| | Sbjct 841626 TCCTGCTCGAGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGT 841567 Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCACA 138717 ||||| ||||||||||| ||||| | |||||| | | ||||| | || || | || Sbjct 841566 TTCCTCGATGATGACCAGATTGCGGAAGGATTCGTTCTCACTTGTGCGGCTTATCTTACT 841507 Query 138718 TCCGATTGTATAATTGAAAC 138737 | |||| || ||||| || Sbjct 841506 TTCGATGTTACCATTGAGAC 841487 >seq1 Length=45320942 Score = 118 bits (130), Expect = 1e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 ||| |||| || ||||| || ||||| || || || | || ||||| || ||||||||| Sbjct 31077821 TACGTCCTCGACGCTGCGGAGGAAGCCGGGATCGACTTGCCTTACTCTTGCCGTGCTGGT 31077880 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 | || || | |||||| || ||| | || ||| ||| || |||||||||||| | Sbjct 31077881 TCGTGCTCAAGCTGTGCCGGCAAAGTTGTGTCTGGATTTGTTGACCAGTCTGACCAGAGT 31077940 Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCACA 138717 ||||| ||||||||||| ||||| ||||| ||| | | ||||| | || || || || Sbjct 31077941 TTCCTCGATGATGACCAGATTGCTGCAGGGTTTGTTCTCACTTGTGCGGCTTATCCTACC 31078000 Query 138718 TCCGATTGTATAATTGAAAC 138737 || ||| || ||||| || Sbjct 31078001 TCTGATGTTACCATTGAGAC 31078020 Score = 118 bits (130), Expect = 1e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 ||| |||| || ||||| || ||||| || || || | || ||||| || ||||||||| Sbjct 31114854 TACGTCCTCGACGCTGCGGAGGAAGCCGGGATCGACTTGCCTTACTCTTGCCGTGCTGGT 31114795 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 | || || | |||||| || ||| | || ||| ||| || |||||||||||| | Sbjct 31114794 TCGTGCTCAAGCTGTGCCGGCAAAGTTGTGTCTGGATTTGTTGACCAGTCTGACCAGAGT 31114735 Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCACA 138717 ||||| ||||||||||| ||||| ||||| ||| | | ||||| | || || || || Sbjct 31114734 TTCCTCGATGATGACCAGATTGCTGCAGGGTTTGTTCTCACTTGTGCGGCTTATCCTACC 31114675 Query 138718 TCCGATTGTATAATTGAAAC 138737 || ||| || ||||| || Sbjct 31114674 TCTGATGTTACCATTGAGAC 31114655 >seq16 Length=18736220 Score = 114 bits (126), Expect = 2e-20 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 ||| |||| || |||||||| |||||||| || || | || ||||| || ||||| ||| Sbjct 7499795 TACGTCCTCGACGCTGCTGAGGAAGCAGGGATCGACTTGCCTTACTCTTGCCGTGCCGGT 7499854 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 | || || | ||| || |||||| | || || | || || |||||||||||| | Sbjct 7499855 TCTTGCTCGAGCTGCGCAGGTAAAGTTGTGTCTGGTTCGGTTGACCAGTCTGACCAGAGT 7499914 Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCACA 138717 ||||| ||||||||||| ||||| | ||| ||| || | ||||| | || || || || Sbjct 7499915 TTCCTCGATGATGACCAGATTGCTGAAGGGTTTGTCCTCACTTGTGCGGCGTATCCTACT 7499974 Query 138718 TCCGAT 138723 || ||| Sbjct 7499975 TCTGAT 7499980 >seq11 Length=32467241 Score = 113 bits (124), Expect = 5e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 ||| |||| || ||||| || ||||| || || || | || ||||| || || || ||| Sbjct 7692643 TACGTCCTCGACGCTGCGGAGGAAGCCGGGATCGACTTGCCTTACTCTTGCCGCGCCGGT 7692584 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 | || || | |||||| |||||| | || ||| |||| || |||||||||||| | Sbjct 7692583 TCCTGCTCGAGCTGTGCGGGTAAAGTTGTGTCCGGATCTGTTGACCAGTCTGACCAGAGT 7692524 Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCACA 138717 ||||| ||||||||||| ||||| | ||| ||| | | ||||| | || || || || Sbjct 7692523 TTCCTCGATGATGACCAGATTGCTGAAGGGTTTGTTCTCACTTGTGCGGCTTATCCTACT 7692464 Query 138718 TCCGATTGTATAATTGAAAC 138737 || ||| || ||||| || Sbjct 7692463 TCTGATGTTACCATTGAGAC 7692444 >seq8 Length=29345952 Score = 107 bits (118), Expect = 2e-18 Identities = 105/133 (79%), Gaps = 3/133 (2%) Strand=Plus/Plus Query 178022 TATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAA 178081 ||||||||| | |||||||||||||| |||| ||| |||||||||| || || ||||| Sbjct 6844674 TATGCCTCTAGA-ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAA 6844732 Query 178082 TATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTT 178141 || |||||||||| ||| ||| | ||||| ||||| |||||||| || || || || Sbjct 6844733 CATTCTTATGCACCATTTC--AATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATT 6844790 Query 178142 CTCTGCTATGCAT 178154 |||||||||| Sbjct 6844791 TAGTGCTATGCAT 6844803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605593414593360