Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq16 84.2 5e-11 seq9 84.2 5e-11 >seq16 Length=18736220 Score = 84.2 bits (92), Expect = 5e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 131864 GTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGG 131923 || || |||||||| || ||||| || ||||| || || ||||| | ||||| ||| Sbjct 836809 GTGGCGTTTGCTTGCGTGGAAGGGATCTTCTTCTCGGGGAGCTTCTGCTCGATCTTCTGG 836868 Query 131924 CTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGAT 131983 || ||||||||||| | ||||| || ||| | || ||||| | | ||||||||||| Sbjct 836869 CTCAAGAAGCGTGGGCTCATGCCGGGGCTCACCTTCTCCAACGAGCTGATCTCGAGAGAC 836928 Query 131984 GAAG 131987 |||| Sbjct 836929 GAAG 836932 >seq9 Length=62778564 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 167205 ATTTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCGAAT 167264 |||| |||||||||| | ||| | || || |||| | | ||||||||||||||||| Sbjct 49782305 ATTTGAAAAGAGCACATTAAACTCTCATCAACACTCATCATAGCACCAGCATTATCGAAT 49782246 Query 167265 TCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGAAAAATAATTC 167323 ||| | || ||||| || |||||||||| |||||| | | | || ||| || || Sbjct 49782245 TCAC-CACAGTAATTAGGAGCTGAAAATATAGTAACAAGCTGTCTATCCGCAAAGAACTC 49782187 Query 167324 ATAACCATCTTCAACAAC 167341 ||||||||| || ||||| Sbjct 49782186 ATAACCATCCTCTACAAC 49782169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186664601943906