Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_025429.1 Length=156446 Score E Sequences producing significant alignments: (Bits) Value seq3 82.4 8e-11 seq1 82.4 8e-11 >seq3 Length=43957692 Score = 82.4 bits (90), Expect = 8e-11 Identities = 118/164 (72%), Gaps = 3/164 (2%) Strand=Plus/Plus Query 142570 GCGTGGAACCCTGCTGAAGTCGACGACATGGCACTTCCTCCGTGTCACATGATGTTCCAA 142629 || ||||||||| |||| || | ||||| || |||||||| |||||| | || Sbjct 31765652 GCTTGGAACCCTTCTGACCTCAAGCTGATGGCGCTGCCTCCGTGCCACATGTTTGCGCAG 31765711 Query 142630 TTCCACGTCGACTCGAAGAAGCGTCTGTCATGCCAGCTGTATCAGCGTTCGGCAGACTGG 142689 ||| | || | |||| | | || ||||||||| ||||||||||||| || || | Sbjct 31765712 TTCTATGTGGCG--GAAGGGGAG-CTCTCATGCCAGATGTATCAGCGTTCAGCGGATATG 31765768 Query 142690 TTCCTCGGCGTTCCGTTCAACATTGCTTCGTACGCGCTTCTCAC 142733 ||| || || ||||| ||||||||||| ||| | ||||| || Sbjct 31765769 AGCCTTGGTGTGCCGTTTAACATTGCTTCCTACTCTCTTCTTAC 31765812 Score = 82.4 bits (90), Expect = 8e-11 Identities = 118/164 (72%), Gaps = 3/164 (2%) Strand=Plus/Minus Query 142570 GCGTGGAACCCTGCTGAAGTCGACGACATGGCACTTCCTCCGTGTCACATGATGTTCCAA 142629 || ||||||||| |||| || | ||||| || |||||||| |||||| | || Sbjct 31810089 GCTTGGAACCCTTCTGACCTCAAGCTGATGGCGCTGCCTCCGTGCCACATGTTTGCGCAG 31810030 Query 142630 TTCCACGTCGACTCGAAGAAGCGTCTGTCATGCCAGCTGTATCAGCGTTCGGCAGACTGG 142689 ||| | || | |||| | | || ||||||||| ||||||||||||| || || | Sbjct 31810029 TTCTATGTGGCG--GAAGGGGAG-CTCTCATGCCAGATGTATCAGCGTTCAGCGGATATG 31809973 Query 142690 TTCCTCGGCGTTCCGTTCAACATTGCTTCGTACGCGCTTCTCAC 142733 ||| || || ||||| ||||||||||| ||| | ||||| || Sbjct 31809972 AGCCTTGGTGTGCCGTTTAACATTGCTTCCTACTCTCTTCTTAC 31809929 >seq1 Length=45320942 Score = 82.4 bits (90), Expect = 8e-11 Identities = 118/164 (72%), Gaps = 3/164 (2%) Strand=Plus/Minus Query 142570 GCGTGGAACCCTGCTGAAGTCGACGACATGGCACTTCCTCCGTGTCACATGATGTTCCAA 142629 || ||||||||| |||| || | ||||| || |||||||| |||||| | || Sbjct 31775582 GCTTGGAACCCTTCTGACCTCAAGCTGATGGCGCTGCCTCCGTGCCACATGTTTGCGCAG 31775523 Query 142630 TTCCACGTCGACTCGAAGAAGCGTCTGTCATGCCAGCTGTATCAGCGTTCGGCAGACTGG 142689 ||| | || | |||| | | || ||||||||| ||||||||||||| || || | Sbjct 31775522 TTCTATGTGGCG--GAAGGGGAG-CTCTCATGCCAGATGTATCAGCGTTCAGCGGATATG 31775466 Query 142690 TTCCTCGGCGTTCCGTTCAACATTGCTTCGTACGCGCTTCTCAC 142733 ||| || || ||||| ||||||||||| ||| | ||||| || Sbjct 31775465 AGCCTTGGTGTGCCGTTTAACATTGCTTCCTACTCTCTTCTTAC 31775422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500438226684960