Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq14 179 1e-40 seq8 107 6e-19 >seq14 Length=28343526 Score = 179 bits (198), Expect = 1e-40 Identities = 211/283 (75%), Gaps = 2/283 (1%) Strand=Plus/Plus Query 19831 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGT 19890 ||| |||| | |||||||||||||| | | || || || | ||||||||| ||| Sbjct 20844998 TTATATGGATTGTGAGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATTGCTGT 20845057 Query 19891 TGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTC 19949 ||| || || | ||| |||||| | || || || ||||| | ||| ||| ||| || Sbjct 20845058 TGCATATTCAGATCCTGTTGCAACTGCTATTGGTGT-TTTCTTGATCTGCCCAATTGATC 20845116 Query 19950 AGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGG 20009 | || || || || ||| ||||||| | || ||||| ||||| ||||||| ||| | | Sbjct 20845117 AAGGAAGTTTTTCTGATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTG 20845176 Query 20010 TATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTG 20069 |||||||| | || || |||||||| |||||||| || |||||| | ||||| ||||||| Sbjct 20845177 TATTCCAAACTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 20845236 Query 20070 TATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGT 20112 ||||||| || || || || ||||| ||||| |||| || || Sbjct 20845237 TATTCGGCGGCTCTCTTTTTAGTGCTATGCATAGTTCCCTGGT 20845279 >seq8 Length=29345952 Score = 107 bits (118), Expect = 6e-19 Identities = 108/138 (78%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 19969 TATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAA 20028 ||||||| | | ||||| ||||| ||||||| ||| | |||||||| || || || || Sbjct 6844674 TATGCCTCTAGA-ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAA 6844732 Query 20029 CATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATT 20088 |||||| ||||||| ||| | || | ||||| |||||||||||||| || || ||||| Sbjct 6844733 CATTCTTATGCACCATTTCAA--TGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATT 6844790 Query 20089 CAGTGCGATGCACGGTTC 20106 ||||| ||||| |||| Sbjct 6844791 TAGTGCTATGCATAGTTC 6844808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148811575484868