Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq14 149 2e-31 seq8 87.8 5e-13 >seq14 Length=28343526 Score = 149 bits (164), Expect = 2e-31 Identities = 202/282 (72%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 28959 TTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGT 29018 ||| |||| | |||||||||||||| | | || || || | || |||||| ||| Sbjct 20844998 TTATATGGATTGTGAGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATTGCTGT 20845057 Query 29019 CGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCA 29078 ||||| |||| ||| || ||| | || || |||||| | ||| |||| | | ||| Sbjct 20845058 TGCATATTCAGATCCTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATTGATCA 20845117 Query 29079 AGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGT 29138 ||| |||| || |||||| | || || || || || ||||||| ||| | || Sbjct 20845118 AGGAAGTTTTTCTGATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGT 20845177 Query 29139 GTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGT 29198 |||||| | || || |||||||| |||||||| || |||||| | || || ||||| || Sbjct 20845178 ATTCCAAACTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 20845237 Query 29199 GTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGT 29240 ||||| ||||| || |||||||| ||||| |||| || || Sbjct 20845238 ATTCGGCGGCTCTCTTTTTAGTGCTATGCATAGTTCCCTGGT 20845279 >seq8 Length=29345952 Score = 87.8 bits (96), Expect = 5e-13 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 29110 ATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCAC 29169 || || || || ||||||| ||| | || ||||| || || || |||||||| |||||| Sbjct 6844686 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCAC 6844745 Query 29170 CCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCAC 29229 | ||| | || | || || ||||| || ||||| ||||| ||||||||||| ||||| Sbjct 6844746 CATTTCAA--TGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCAT 6844803 Query 29230 GGTTC 29234 |||| Sbjct 6844804 AGTTC 6844808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146648625840116