Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq18 114 2e-20 seq3 114 2e-20 seq1 114 2e-20 >seq18 Length=77673080 Score = 114 bits (126), Expect = 2e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 146916 TTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTC 146975 || ||| ||| |||||| || | || ||||| || ||||| | | || | ||| || Sbjct 7477118 TTGCAGAGGCCTCACGTGATTTCGATACACGTGAGCATCCCCAATGACATGGATAAAATC 7477177 Query 146976 CCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTAT 147035 || || ||| || ||| || || | |||| | || || || |||||| || || Sbjct 7477178 ACCAGGAACAAGATCGCACACATGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAAT 7477237 Query 147036 GTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTC 147095 ||| || || || || |||||||| ||| | || | ||| |||| || ||||||||||| Sbjct 7477238 GTTAAACGGCACACCGAGGCCCATATCCGCTGAACGCTGATACATTTGACACGAGAGCTC 7477297 Query 147096 CCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 |||||| ||||||| ||||| | |||||||| || || |||||||| Sbjct 7477298 CCCGTCCACCACGTAGAACTGTGCGAACATGTGGCATGGAGGAAGCGCCAT 7477348 >seq3 Length=43957692 Score = 114 bits (126), Expect = 2e-20 Identities = 184/259 (71%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 146920 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCC 146979 || ||| |||||| | | || || || || ||||| | | || ||||| || || Sbjct 31765905 AGAGGCCTCACGTGAGTTCGATACACATGAGCATCCCCAATGACATGGACAAAATCACCA 31765846 Query 146980 GGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTG 147039 || ||| | ||| || || | |||| | || || || |||||| || ||||| Sbjct 31765845 GGGACAAGATCACACACATGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTA 31765786 Query 147040 AAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCG 147099 || || || || |||| ||| ||| | || | ||| |||| |||||| ||||||||||| Sbjct 31765785 AACGGCACACCAAGGCTCATATCCGCTGAACGCTGATACATCTGGCATGAGAGCTCCCCT 31765726 Query 147100 TCGGCCACGTAAAACTG-GCACAGGATGTGGCACGGCGGCAGCGCCAT-GGCGGGCAGGT 147157 || ||||| || ||||| ||| | ||||||||||| ||||||||||| || | |||| Sbjct 31765725 TCCGCCACATAGAACTGCGCAAAC-ATGTGGCACGGAGGCAGCGCCATCAGCTTG-AGGT 31765668 Query 147158 CCGCGGGGTTCCAGGCCGA 147176 | | |||||||| || || Sbjct 31765667 CAGAAGGGTTCCAAGCAGA 31765649 Score = 114 bits (126), Expect = 2e-20 Identities = 184/259 (71%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 146920 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCC 146979 || ||| |||||| | | || || || || ||||| | | || ||||| || || Sbjct 31809836 AGAGGCCTCACGTGAGTTCGATACACATGAGCATCCCCAATGACATGGACAAAATCACCA 31809895 Query 146980 GGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTG 147039 || ||| | ||| || || | |||| | || || || |||||| || ||||| Sbjct 31809896 GGGACAAGATCACACACATGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTA 31809955 Query 147040 AAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCG 147099 || || || || |||| ||| ||| | || | ||| |||| |||||| ||||||||||| Sbjct 31809956 AACGGCACACCAAGGCTCATATCCGCTGAACGCTGATACATCTGGCATGAGAGCTCCCCT 31810015 Query 147100 TCGGCCACGTAAAACTG-GCACAGGATGTGGCACGGCGGCAGCGCCAT-GGCGGGCAGGT 147157 || ||||| || ||||| ||| | ||||||||||| ||||||||||| || | |||| Sbjct 31810016 TCCGCCACATAGAACTGCGCA-AACATGTGGCACGGAGGCAGCGCCATCAGCTTG-AGGT 31810073 Query 147158 CCGCGGGGTTCCAGGCCGA 147176 | | |||||||| || || Sbjct 31810074 CAGAAGGGTTCCAAGCAGA 31810092 >seq1 Length=45320942 Score = 114 bits (126), Expect = 2e-20 Identities = 184/259 (71%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 146920 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCC 146979 || ||| |||||| | | || || || || ||||| | | || ||||| || || Sbjct 31775329 AGAGGCCTCACGTGAGTTCGATACACATGAGCATCCCCAATGACATGGACAAAATCACCA 31775388 Query 146980 GGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTG 147039 || ||| | ||| || || | |||| | || || || |||||| || ||||| Sbjct 31775389 GGGACAAGATCACACACATGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTA 31775448 Query 147040 AAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCG 147099 || || || || |||| ||| ||| | || | ||| |||| |||||| ||||||||||| Sbjct 31775449 AACGGCACACCAAGGCTCATATCCGCTGAACGCTGATACATCTGGCATGAGAGCTCCCCT 31775508 Query 147100 TCGGCCACGTAAAACTG-GCACAGGATGTGGCACGGCGGCAGCGCCAT-GGCGGGCAGGT 147157 || ||||| || ||||| ||| | ||||||||||| ||||||||||| || | |||| Sbjct 31775509 TCCGCCACATAGAACTGCGCA-AACATGTGGCACGGAGGCAGCGCCATCAGCTTG-AGGT 31775566 Query 147158 CCGCGGGGTTCCAGGCCGA 147176 | | |||||||| || || Sbjct 31775567 CAGAAGGGTTCCAAGCAGA 31775585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583416916574400