Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq18 342 7e-88 seq6 324 2e-82 seq2 318 8e-81 seq16 309 4e-78 seq4 91.5 2e-12 seq17 86.0 9e-11 >seq18 Length=77673080 Score = 342 bits (378), Expect = 7e-88 Identities = 392/522 (75%), Gaps = 10/522 (2%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| |||| |||| || ||| ||||| |||||| || ||||||||||||||||| Sbjct 68188856 TGTTCCCAATCCAATACCCGCAGATCTGGGAGATGTAC-AAGAAGGCCGAGGCCTCCTTC 68188798 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGAC 1455872 |||||||||||||| ||||||||| | ||||| | |||||| | || | |||| Sbjct 68188797 TGGACCGCCGAGGAAGTCGACCTCTCCCAGGACACACGCGACTGGGAGAATCTCAACGAC 68188738 Query 1455873 GACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGT 1455932 | |||||||| |||||||| |||||||||||||| || ||||||| ||| || ||||| Sbjct 68188737 GGAGAGCGCCACTTCATCAAACACGTCCTCGCCTTCTT-CGCCGCCTCCGACGGAATCGT 68188679 Query 1455933 GGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTT 1455992 ||||||||| ||| || || ||| || ||||| | | ||||| || || Sbjct 68188678 CCTCGAGAACCTCGCCTCACGGTTCATGTCCGACGTCCAGGTCTCCGAGGCGCGCGCCTT 68188619 Query 1455993 TTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGA 1456052 ||||||||||||||||| ||||| ||||||||||| || | ||| |||||| | || Sbjct 68188618 CTACGGGTTCCAGATCGCGATCGAGAACATCCACTCCGAGATGTACAGCCTCCTGTTAGA 68188559 Query 1456053 CACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCC 1456112 ||| ||| |||||||| |||| |||||| ||||| ||||| ||||| || | || Sbjct 68188558 CACGTACATCAAGGACAACAAGGAGAGGGACCATCTCTTCCGCGCGATCGAGACCATCCC 68188499 Query 1456113 GTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACAC 1456172 | || ||| |||||| | ||||| |||| ||||||| || || | | || Sbjct 68188498 CTGCGTCGCGAAGAAGGCCCAATGGGCCATGACGTGGATC------GATGGGTCCCAGAC 68188445 Query 1456173 TTT-GCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230 ||| |||||| || |||| | ||| || |||| || || ||||| ||||| || || || Sbjct 68188444 TTTCGCCGAGAGGATCGTGGCCTTCGCGTGCGTGGAAGGGATCTTCTTCTCCGGTAGCTT 68188385 Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 |||| | ||||| |||||||||||||| || ||||||||||| Sbjct 68188384 CTGCTCGATCTTCTGGCTCAAGAAGCGAGGGCTCATGCCCGG 68188343 Score = 113 bits (124), Expect = 6e-19 Identities = 205/292 (70%), Gaps = 11/292 (4%) Strand=Plus/Minus Query 1456454 CACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACCGACGTG 1456513 ||||| || || || || ||| |||||||| | || | |||| || || || | | Sbjct 68188299 CACTGCGATTTCGCGTGCCTGATCTACACGCTCCTGAGGACGAAGC--TC-ACGGAGGAG 68188243 Query 1456514 CCCAAGCAGATCATCGT---CGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCG 1456570 | | | || ||||| ||| ||||| |||||||||| |||||||| |||| || Sbjct 68188242 CGCGTGAAGTCGATCGTGTGCGACGCCGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCG 68188183 Query 1456571 CTGCCGGTGGCGCTCATCGGCATGAAC-GCCACCGCTCATGTGCCAGTACATTGAATTTT 1456629 || ||| ||| | | || |||||| | ||| | ||| | |||||||| || ||| Sbjct 68188182 CTTCCGTGCGCGTTGGTGGGGATGAACCGTGACC--TGATGAGTCAGTACATCGAGTTT- 68188126 Query 1456630 GTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCC 1456689 || || || | || || | |||||| || | ||| |||| ||| | |||| || || Sbjct 68188125 GTGGCGGATAGGCTTCTGGGGGCGCTTGGGTACGG-GAAGGTGTACGGTGCGGCGAATCC 68188067 Query 1456690 GTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 ||| |||||||||||||||||||| |||| || |||||||| |||||| Sbjct 68188066 GTTTGATTGGATGGAGTTGATCTCGCTTCAGGGGAAAACCAACTTCTTCGAG 68188015 >seq6 Length=38054609 Score = 324 bits (358), Expect = 2e-82 Identities = 413/561 (74%), Gaps = 11/561 (2%) Strand=Plus/Plus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| |||| ||||| || ||| ||||| |||||| || |||||||||||||| || Sbjct 29819584 TGTTCCCGATCCACTACCCGCAGATCTGGGAGATGTAC-AAGAAGGCCGAGGCCTCTTTC 29819642 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGAC 1455872 ||||||||||| || ||||| ||| | ||||| | |||||| | || | |||| Sbjct 29819643 TGGACCGCCGAAGAAGTCGATCTCTCCCAAGACACTCGCGACTGGGAGAATCTCAACGAC 29819702 Query 1455873 GACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGT 1455932 | |||||||| |||||||| |||||||||||||| || |||||| ||| || ||||| Sbjct 29819703 GGAGAGCGCCACTTCATCAAACACGTCCTCGCCTTCTT-CGCCGCATCCGACGGAATCGT 29819761 Query 1455933 GGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTT 1455992 ||||| || ||| ||| || ||| || || ||| | | ||||| ||| || Sbjct 29819762 TTTAGAGAATCTCGCCTCCCGGTTCATGTCCGACGTGCAAGTCTCCGAGGCGCGTGCCTT 29819821 Query 1455993 TTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGA 1456052 ||||||||||||||||| || || || |||||||| || | ||| |||||| |||| Sbjct 29819822 CTACGGGTTCCAGATCGCGATTGAGAATATCCACTCAGAGATGTACAGCCTCCTGCTCGA 29819881 Query 1456053 CACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCC 1456112 ||| ||| ||||||| |||| |||||||||||| ||||| || || || | || Sbjct 29819882 CACGTACATCAAGGATAATAAAGAGAGGGACCACCTCTTCCGCGCGATTGAAACCATACC 29819941 Query 1456113 GTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACAC 1456172 | || ||| |||||| | ||||| |||| ||||||| || || ||| | || Sbjct 29819942 TTGCGTCGCGAAGAAGGCCCAATGGGCCATGACGTGGATCGAC-----GGATCTC-AGAC 29819995 Query 1456173 TTT-GCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230 ||| |||||| || |||| | ||||| |||| || || ||||| ||||| || || || Sbjct 29819996 TTTCGCCGAGAGGATCGTGGCGTTTGCTTGCGTGGAAGGGATCTTCTTCTCCGGAAGCTT 29820055 Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACG 1456290 |||| | ||||| ||||| |||||||| || |||||||| || || ||| ||||| Sbjct 29820056 CTGCTCGATCTTCTGGCTGAAGAAGCGAGGGCTCATGCCTGG-GTTAACCTTCTCCAACG 29820114 Query 1456291 AATTTATCAGTCGCGACGAAG 1456311 | || ||| ||| ||||||| Sbjct 29820115 AGTTGATCTCTCGAGACGAAG 29820135 >seq2 Length=25468329 Score = 318 bits (352), Expect = 8e-81 Identities = 414/564 (73%), Gaps = 14/564 (2%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| |||| ||||| | ||| ||||| |||||| | |||| |||| |||||||| Sbjct 22244295 TGTTCCCGATCCACTACCCTCAGATCTGGGAGATGTACAAGAAAG-CCGAAGCCTCCTTC 22244237 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCG---CTGAGC 1455869 |||||||||||||| ||||||||| | ||||| | |||||| | | || | | Sbjct 22244236 TGGACCGCCGAGGAAGTCGACCTCTCCCAAGACACCCGCGACTGGGAGACCAACCTCAAC 22244177 Query 1455870 GACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCAT 1455929 |||| ||||||||| |||||||| |||||||||||||| || ||||||| ||| || || Sbjct 22244176 GACGGCGAGCGCCACTTCATCAAACACGTCCTCGCCTTCTT-CGCCGCCTCCGACGGAAT 22244118 Query 1455930 CGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTT 1455989 ||| |||||| || ||| ||| || ||| || || || | | ||||| ||| Sbjct 22244117 CGTCCTCGAGAATCTCGCCTCCCGGTTCATGTCCGACGTGCAGGTCTCCGAGGCGCGTGC 22244058 Query 1455990 GTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGAT 1456049 || ||||||||||||||||| || || || |||||||| || | ||| ||| || | Sbjct 22244057 CTTCTACGGGTTCCAGATCGCGATTGAGAATATCCACTCGGAGATGTACAGCCTCTTGCT 22243998 Query 1456050 CGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGT 1456109 || || ||| |||||||| |||| |||||| ||||| ||||| || || || | Sbjct 22243997 AGATACGTACATCAAGGACAACAAGGAGAGGGACCATCTCTTCCGCGCGATTGAGACCAT 22243938 Query 1456110 GCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGA 1456169 || | || ||| |||||| | ||||| ||||||||||| || || ||| | Sbjct 22243937 CCCTTGCGTCGCGAAGAAGGCCCAATGGGCCTTGAAGTGGATCGAC-----GGATCTC-A 22243884 Query 1456170 CACTTT-GCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAG 1456227 ||||| |||||| || |||| | ||| || |||| || || ||||| ||||| || || Sbjct 22243883 GACTTTCGCCGAGAGGATCGTGGCCTTCGCGTGCGTGGAAGGGATCTTCTTCTCCGGAAG 22243824 Query 1456228 TTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCA 1456287 |||||| ||||||| |||||||||||||| || |||||||| || | || ||| || Sbjct 22243823 CTTCTGCTCCATCTTCTGGCTCAAGAAGCGAGGGCTCATGCCGGGGC-TCACCTTCTCCA 22243765 Query 1456288 ACGAATTTATCAGTCGCGACGAAG 1456311 |||| | ||| || ||||||| Sbjct 22243764 ACGAGCTGATCTCGCGGGACGAAG 22243741 >seq16 Length=18736220 Score = 309 bits (342), Expect = 4e-78 Identities = 391/530 (74%), Gaps = 17/530 (3%) Strand=Plus/Plus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| |||| ||||| | ||| ||||| |||||| | |||| |||| |||||||| Sbjct 836378 TGTTCCCGATCCACTACCCTCAGATCTGGGAGATGTACAAGAAAG-CCGAAGCCTCCTTC 836436 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCG---CTGAGC 1455869 |||||||||||||| ||||||||| | ||| | | |||||| | || | | Sbjct 836437 TGGACCGCCGAGGAAGTCGACCTCTCCCAAGACCCCCGCGACTGGGAGGAAAATCTCAAC 836496 Query 1455870 GACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCAT 1455929 |||| |||||||| ||| |||| |||||||||||||| || |||||| ||| || || Sbjct 836497 GACGGAGAGCGCCACTTCGTCAAACACGTCCTCGCCTTCTT-CGCCGCATCCGACGGGAT 836555 Query 1455930 CGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTT 1455989 ||| ||||||||| ||| || || ||| || ||||| | | ||||| || Sbjct 836556 CGTCCTCGAGAACCTCGCCTCTCGTTTCATGTCCGACGTCCAGGTCTCCGAGGCCCGCGC 836615 Query 1455990 GTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGAT 1456049 || ||||||||||||||||| ||||| ||||||||||| || | ||| |||||| | Sbjct 836616 CTTCTACGGGTTCCAGATCGCGATCGAGAACATCCACTCCGAGATGTACAGTCTCCTGTT 836675 Query 1456050 CGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGT 1456109 || || ||| ||||||| |||| |||||| ||||| ||||| ||||| ||| | Sbjct 836676 AGATACTTACATCAAGGATAATAGAGAGAGGGACCATCTCTTCCGCGCGATCGAGACGAT 836735 Query 1456110 GCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGA 1456169 || | || ||| |||||| | ||||| |||| ||||||| || ||| || | Sbjct 836736 CCCCTGCGTCGCGAAGAAGGCCCAATGGGCCATGACGTGGATCGAC--GGA-----TC-A 836787 Query 1456170 CA---CTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGC 1456225 || |||||||||| || |||| | ||||| |||| || || ||||| |||||||| Sbjct 836788 CAGGCCTTTGCCGAGAGGATCGTGGCGTTTGCTTGCGTGGAAGGGATCTTCTTCTCGGGG 836847 Query 1456226 AGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 || |||||| | ||||| |||||||||||||| || |||||||| || || Sbjct 836848 AGCTTCTGCTCGATCTTCTGGCTCAAGAAGCGTGGGCTCATGCCGGGGCT 836897 Score = 86.0 bits (94), Expect = 9e-11 Identities = 149/212 (70%), Gaps = 5/212 (2%) Strand=Plus/Plus Query 1456531 CGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGCTCATCGG 1456590 ||| || || |||||||||| |||||||| |||| |||| ||| ||| | | || Sbjct 837015 CGACGCGGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTCCCGTGCGCGTTGGTGGG 837074 Query 1456591 CATGAAC-GCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGC 1456649 |||||| | | | | ||| | ||||| ||||| ||| || || || | || | | Sbjct 837075 GATGAACAGTGAAC--TGATGAGTCAGTATATTGAGTTT-GTGGCGGATAGGTTGTTGGG 837131 Query 1456650 GGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGA 1456709 ||||| || | ||| |||| ||| | ||| || ||||| ||||||||||||| Sbjct 837132 AGCGCTTGGGTACGG-GAAGGTGTACGGTGTGGCGAATCCGTTTGATTGGATGGAGTTGA 837190 Query 1456710 TCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 ||||||| |||| || || ||||| |||||| Sbjct 837191 TCTCGCTTCAGGGTAAAACGAACTTCTTCGAG 837222 >seq4 Length=33175494 Score = 91.5 bits (100), Expect = 2e-12 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||| || |||||||| ||||| || | | ||| ||| || | |||| || Sbjct 22971613 ATCTTCAAGGTCCTGAAGCAGGTCCACCCT-GA--CATCGGG--ATC-TCGAGCAAGGCC 22971666 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||||| || |||||||||| |||| ||| | |||||| Sbjct 22971667 ATGGGGATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGGCCTCC 22971726 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||| | | ||||||| ||||||| | | ||||||||||||||||| ||| Sbjct 22971727 AAGCTCGCGAGGTACAACAAGAAGCCCACGATCACCTCCCGCGAGATCCAGACCGCTGTG 22971786 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | | | ||| || || || | |||||||||||| || || |||| Sbjct 22971787 AGGCTCGTTCTCCCCGGTGAGCTCGCTAAGCACGCCGTCTCTGAAGGAACCA 22971838 >seq17 Length=44223734 Score = 86.0 bits (94), Expect = 9e-11 Identities = 106/141 (75%), Gaps = 8/141 (6%) Strand=Plus/Plus Query 1456135 TGGGCGATGAAGTGGATCAACAAGGAGGGCCTC-GACACTTTGCCGAGCGGCTCGTCGGC 1456193 |||||||||| ||||| | || || ||| ||| ||| || ||| || |||| | Sbjct 16427268 TGGGCGATGACGTGGAACGAC-----GGATCTCAGAC-CTTCGCGGAGAGGAGTGTCGCC 16427321 Query 1456194 TTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAG 1456252 || ||| ||| ||| || ||||| ||||| || || |||||| | ||||| ||||||||| Sbjct 16427322 TTCGCCTGCGCCGAAGGGATCTTCTTCTCCGGTAGCTTCTGCTCGATCTTCTGGCTCAAG 16427381 Query 1456253 AAGCGCGGCCTCATGCCCGGT 1456273 || || || |||||||| ||| Sbjct 16427382 AAACGAGGGCTCATGCCTGGT 16427402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176871180386852