Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq9 304 1e-77 seq14 185 1e-41 seq60 136 5e-27 seq8 113 5e-20 seq390 109 6e-19 seq3071 91.5 2e-13 >seq9 Length=62778564 Score = 304 bits (336), Expect = 1e-77 Identities = 446/625 (71%), Gaps = 11/625 (2%) Strand=Plus/Minus Query 159759 CAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTATTCCTTATCTATCC 159818 |||| | || | ||||||||||| |||||||||||||| || || || || ||||| Sbjct 56234949 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 56234890 Query 159819 ACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATT 159878 ||| ||||| ||| |||||||||| |||||||| || ||||| || || ||| |||| Sbjct 56234889 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 56234830 Query 159879 C---CTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGG 159935 | || || |||| |||||||| | || ||| | || || | || ||| ||||||| Sbjct 56234829 CATCCTCTTTTTCCA--AGGGTTTC-ATAATTGGGCACTGAATTCATTTCATTTGATGGG 56234773 Query 159936 AGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATCCATGGTGCTACTGTAGAGA- 159994 | |||| ||| |||| || | || ||||| || || || |||||||||||||||| | Sbjct 56234772 AATTGCCGGTGTACTTGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGAAAT 56234713 Query 159995 ACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTAAGGCGTTTGAGCCTACTCAAG 160054 | || | |||| |||| || ||||| | ||| || ||| | || | ||||| Sbjct 56234712 ATTTTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAG 56234653 Query 160055 AAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTG 160114 ||||| |||||||| |||||||| || |||||||| ||||| | ||||| || | || Sbjct 56234652 CCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTG 56234593 Query 160115 CATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTAT 160174 | ||||| || || | ||| | || || || ||||| ||||| || || | ||| || Sbjct 56234592 CTTTTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAA 56234533 Query 160175 GGACATCCTCTATTGGCATTATTGGTCTTGCTTTCAACCTTCGTGCTTACGATTTCGTGA 160234 ||| || ||| || | ||||| ||||| ||||| |||| || | ||| | Sbjct 56234532 GGATGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTT 56234473 Query 160235 GTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAGACCTTCTACACCAAGAACATCC 160294 || || ||| | ||||| |||||||| | | |||| || ||||| || || || || | Sbjct 56234472 CCCAAGAAATTTGTGCAGCGGAAGATCC-GGACTTGAAACTTTCTATACTAAAAATATTC 56234414 Query 160295 TATTGAATGAAGGACTTCGTGCTTGGATGGCACCT---GCTGATCAACCACATGAAAACT 160351 | || || ||||| |||| |||||||||| || | | | || || ||||||||| Sbjct 56234413 TTTTAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACA 56234354 Query 160352 TTATCTTCCCTGAGGAAGTACTACC 160376 |||| ||| ||||||| || |||| Sbjct 56234353 TTATATTCACTGAGGAGGTTTTACC 56234329 Score = 98.7 bits (108), Expect = 1e-15 Identities = 263/383 (69%), Gaps = 17/383 (4%) Strand=Plus/Plus Query 157703 AACCGTTTGTATGTTGGTTGGTTCGGTGTACTGATGATTCCTACGTTGCTTG-CTGCAAC 157761 |||||||| ||||| ||||| ||||| ||||||| ||||| || ||| | || || Sbjct 10190652 AACCGTTTTACAGTTGGATGGTTTGGTGTTTTGATGATCCCTACCTTAATTGACCGCTAC 10190711 Query 157762 TATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCT-GTGGACATTGACGGCATCCGCG 157820 | | ||| || | | ||| | |||||| || || || || ||||| | || | | Sbjct 10190712 TTCCGTTTTTAT--TAGA-TTCATTGCTGCTTCCTCTAGTAGATATTGAGTGTATT-GTG 10190767 Query 157821 AACCAGTTG-CTGGTTCACTCATGTATGGT--AACAACATCATCTCTGGTGCAGTTGTTC 157877 |||| ||| ||||| | || | || ||| ||||| || | || |||||| || || Sbjct 10190768 AACCTGTTTTCTGGT-CTCTTCTTTAAGGTGAAACAATATTAGTTCCGGTGCA-TTATTT 10190825 Query 157878 CTAGT-TCAAACG-CAATC-GGTCTCCACTTCTACCCCATCTGGGAAGCAGCATCTCTTG 157934 ||| | || | | | || ||| | || || ||| |||||||| |||| ||||| ||| Sbjct 10190826 CTACTGTCTCAGGGCTATGTGGTTTGCATTTTTACGCCATCTGG-AAGCTGCATCCGTTG 10190884 Query 157935 ACGAG-TGGCTGTATAACGGTGGTC-CTTTCCAACTTGTAGTATTCCACTTCCTGATCGG 157992 | || ||||| || || ||||| ||| |||| | || | ||||| | | || Sbjct 10190885 ATGAAATGGCTATACAAACGTGGTTGCTTATGAACTAATTGTTCTACACTTTTTACTTGG 10190944 Query 157993 CATCTATGCCTATATGGGACGTGAGTGGGAACTCTCTTACCGTTTAGGTATGCGCCCATG 158052 | | |||||||| |||||||||||||| || |||| | |||||||| || || Sbjct 10190945 TGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTG 10191004 Query 158053 GATCTGTGTAGCATATTCTGCTC 158075 ||| ||| |||||||| |||| Sbjct 10191005 GATTGCTGTTGCATATTCAGCTC 10191027 >seq14 Length=28343526 Score = 185 bits (204), Expect = 1e-41 Identities = 203/270 (75%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 158003 TATATGGGACGTGAGTGGGAACTCTCTTACCGTTTAGGTATGCGCCCATGGATCTGTGTA 158062 ||||||| ||||||||||||| || | || | ||||| || || ||||| ||| Sbjct 20844999 TATATGGATTGTGAGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATTGCTGTT 20845058 Query 158063 GCATATTCTGCTCCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTTCGGTCAA 158122 |||||||| | ||| || || | || | || || ||| | ||| || | | |||| Sbjct 20845059 GCATATTCAGATCCTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATTGATCAA 20845118 Query 158123 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTA 158182 || ||| || ||| ||||||||| || |||||||||||||| |||| ||| ||||| Sbjct 20845119 GGAAGTTTTTCTGATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTA 20845178 Query 158183 TTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTA 158242 |||||| | || |||||||| ||||||||||| || || ||| | ||||| ||||| ||| Sbjct 20845179 TTCCAAACTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 20845238 Query 158243 TTCGGTGGATCTCTTTTCTCTGCTATGCAT 158272 ||||| || |||||||| |||||||||| Sbjct 20845239 TTCGGCGGCTCTCTTTTTAGTGCTATGCAT 20845268 >seq60 Length=523306 Score = 136 bits (150), Expect = 5e-27 Identities = 184/254 (72%), Gaps = 2/254 (1%) Strand=Plus/Plus Query 159571 TCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAA 159630 || || |||||| || | | | |||||| | | ||| |||| |||||| | ||| Sbjct 21486 TCTACTCCTGCTAATAGTTTAGCGCATTCTTTGATGTAACTGTGGGATCCTGAAGCACAA 21545 Query 159631 GGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGTTGCTCTCCACGGT 159690 || || || || ||||| ||||| || || || ||| | ||||||||||||||| || Sbjct 21546 GGAGATTTTACTCGTTGGTGTCAACTAGGCGGTATGTGGGCTTTTGTTGCTCTCCACTGT 21605 Query 159691 GCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTCG-TCTAGTTGGTAT 159749 || ||| | | |||||||||||| | | |||||||| ||||||| ||| ||| | Sbjct 21606 GCTTTCACATTAATAGGTTTTATGTTGCATTAATTTGAACTTGCTCGATCT-GTTCAATT 21664 Query 159750 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTATTCCT 159809 || ||||| ||||| |||| |||| ||||| |||| ||||||||| ||| || || Sbjct 21665 GCGACCTTATAATGCAGTTGCATTCTTTGGTCTAATTGATGTTTTTGTTTCCGTCTTTCT 21724 Query 159810 TATCTATCCACTGG 159823 || ||||| |||| Sbjct 21725 AATTTATCCTCTGG 21738 >seq8 Length=29345952 Score = 113 bits (124), Expect = 5e-20 Identities = 106/133 (80%), Gaps = 3/133 (2%) Strand=Plus/Plus Query 158140 TATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAA 158199 ||||||||| | |||||||||||||| |||| ||| |||||||||| || || ||||| Sbjct 6844674 TATGCCTCTAGA-ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAA 6844732 Query 158200 CATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTT 158259 ||| |||||||||| ||| ||| | ||||| ||||| |||||||| || || || || Sbjct 6844733 CATTCTTATGCACCATTTC--AATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATT 6844790 Query 158260 CTCTGCTATGCAT 158272 |||||||||| Sbjct 6844791 TAGTGCTATGCAT 6844803 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 158513 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 158572 ||||| || |||||||| |||||||| || | ||||| |||| || ||||| || || Sbjct 10479929 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTTTTAAT 10479870 Query 158573 ACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGA 158625 || ||||| ||| | | ||||| ||| |||||||||||||||||| |||| Sbjct 10479869 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGTATGA 10479817 >seq390 Length=101491 Score = 109 bits (120), Expect = 6e-19 Identities = 96/117 (82%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 159673 TTTGTTGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATT 159732 |||||||||||||| ||||| ||||| | |||||||||||| |||| ||||||||| || Sbjct 2252 TTTGTTGCTCTCCATGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTT 2311 Query 159733 GCTCG-TCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGC 159788 ||||| ||| ||| | || ||||| ||||| || || ||||||||||| ||||| Sbjct 2312 GCTCGATCT-GTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGC 2367 Score = 105 bits (116), Expect = 8e-18 Identities = 95/117 (81%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 159673 TTTGTTGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATT 159732 |||||||||||||| ||||| ||||| | ||||||||| || |||| ||||||||| || Sbjct 9889 TTTGTTGCTCTCCATGGTGCTTTCGCATTAATAGGTTTTTTGTTACGTCAATTTGAACTT 9948 Query 159733 GCTCG-TCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGC 159788 ||||| ||| ||| | || ||||| ||||| || || ||||||||||| ||||| Sbjct 9949 GCTCGATCT-GTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGC 10004 >seq3071 Length=6037 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 158513 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 158572 ||||| || |||||||| |||||||| || | ||||| |||| || ||||| || || Sbjct 1741 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTTTTAAT 1682 Query 158573 ACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGA 158625 || ||||| ||| | | ||||| ||| |||||||||||||||||| |||| Sbjct 1681 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGTATGA 1629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572954191351200