Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq9 212 7e-50 seq14 161 1e-34 seq28 102 9e-17 seq8 96.9 4e-15 seq16 91.5 2e-13 seq1 86.0 7e-12 seq3071 82.4 9e-11 seq11 82.4 9e-11 >seq9 Length=62778564 Score = 212 bits (234), Expect = 7e-50 Identities = 434/642 (68%), Gaps = 5/642 (1%) Strand=Plus/Minus Query 162068 CAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCC 162127 |||| | || | ||||||||||| |||||||||||||| ||||| || || || || Sbjct 56234949 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 56234890 Query 162128 ATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATT 162187 | | ||||| || |||||| || | || ||||| || || || || ||| |||| Sbjct 56234889 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 56234830 Query 162188 CCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTGAACCCCTTCCATATGATGGGAGT 162247 | | | ||| | ||||| || ||||| ||| | ||||| | || ||| |||||||| | Sbjct 56234829 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGATGGGAAT 56234770 Query 162248 TGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTCACGGAGTCACAGTTGAAA-ATA 162306 ||| ||| |||| || | || || ||| |||||| | || | || || |||| || Sbjct 56234769 TGCCGGTGTACTTGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGAAATATT 56234710 Query 162307 CATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAGG 162366 |||| || |||| || ||||| | || || ||| | | | || | | Sbjct 56234709 TTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCCG 56234650 Query 162367 AAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGT 162426 |||| |||||||| |||||||| || |||||||| ||||| | ||||| || ||| | Sbjct 56234649 AAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCTT 56234590 Query 162427 TTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGA 162486 |||| || || | ||| | || || || ||||| ||||| || || | ||| || ||| Sbjct 56234589 TTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGGA 56234530 Query 162487 CATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTC 162546 || ||| || | ||||| ||| | ||||| |||| || | ||| | | Sbjct 56234529 TGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCCC 56234470 Query 162547 AGGAGATCAGAGCAGCAGAAGATCCTGAGTTTGAAACGTTCTACACTAAGAACATTCTGC 162606 | || || | ||||| |||||||| || ||||||| ||||| ||||| || ||||| Sbjct 56234469 AAGAAATTTGTGCAGCGGAAGATCCGGA-CTTGAAACTTTCTATACTAAAAATATTCTTT 56234411 Query 162607 TCAATGAAGGACTACGTGCATGGTTAGCACCT---GCCGACCAACCCCATGAGAACTTTA 162663 | || ||||| | || | ||| | || || | | || || ||||| ||| ||| Sbjct 56234410 TAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATTA 56234351 Query 162664 TCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 162705 | ||| | || || ||| | || | || | | | ||||||| Sbjct 56234350 TATTCACTGAGGAGGTTTTACCACGTGGAAGCACTCTTTAAT 56234309 Score = 100 bits (110), Expect = 3e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 161168 TATTCTTGTCGTGCTGGTGCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTA 161227 || ||||| ||||| ||| ||||||| ||||||||||||| || | || ||| || Sbjct 18477070 TACTCTTGCCGTGCCGGTTCTTGCTCGAGCTGTGCAGGTAAAGTTGTGTCTGGTTTTGTT 18477011 Query 161228 GACCAGTCTGACCAGTCCTTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACA 161287 ||||||||||||||| ||| | |||||||||||||||| | || || || | || Sbjct 18477010 GACCAGTCTGACCAGAGTTTCCTCGATGATGACCAGATTGCTGCAGGGTTTGTTCTCACC 18476951 Query 161288 TGTGTTGCATATCCTACT 161305 |||| || ||||||||| Sbjct 18476950 TGTGCGGCTTATCCTACT 18476933 >seq14 Length=28343526 Score = 161 bits (178), Expect = 1e-34 Identities = 197/269 (73%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 160287 TATATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 160346 ||||||| |||||||||||||| | | || | ||||| || || ||||| ||| Sbjct 20844999 TATATGGATTGTGAGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATTGCTGTT 20845058 Query 160347 GCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTATATCCTTTCGGTCAA 160406 |||||||| | ||| || || | || || ||| ||| | | | || | | |||| Sbjct 20845059 GCATATTCAGATCCTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATTGATCAA 20845118 Query 160407 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTA 160466 || ||| || ||| ||||||||| || |||||||||||||| |||| ||| ||||| Sbjct 20845119 GGAAGTTTTTCTGATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTA 20845178 Query 160467 TTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTA 160526 |||||| | || ||||| || |||||||| || || |||||| | || || ||||| ||| Sbjct 20845179 TTCCAAACTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 20845238 Query 160527 TTCGGTGGATCTTTGTTCTCTGCTATGCA 160555 ||||| || ||| | || ||||||||| Sbjct 20845239 TTCGGCGGCTCTCTTTTTAGTGCTATGCA 20845267 Score = 109 bits (120), Expect = 6e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 161168 TATTCTTGTCGTGCTGGTGCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTA 161227 || ||||| ||||||||| ||||||| ||||||||||||| || | || || | || Sbjct 23727229 TACTCTTGCCGTGCTGGTTCTTGCTCCAGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTT 23727288 Query 161228 GACCAGTCTGACCAGTCCTTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACA 161287 ||||||||||||||| ||| | |||||||||||||||| |||||| || | || Sbjct 23727289 GACCAGTCTGACCAGAGTTTCCTCGATGATGACCAGATTGCTGAAGGATTCGTTCTCACT 23727348 Query 161288 TGTGTTGCATATCCTACT 161305 |||| || ||||||||| Sbjct 23727349 TGTGCGGCTTATCCTACT 23727366 >seq28 Length=1539140 Score = 102 bits (112), Expect = 9e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 161168 TATTCTTGTCGTGCTGGTGCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTA 161227 || ||||| ||||||||| | ||||| ||||||||||||| || | || || | || Sbjct 841644 TACTCTTGCCGTGCTGGTTCCTGCTCGAGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTT 841585 Query 161228 GACCAGTCTGACCAGTCCTTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACA 161287 ||||||||||||||| ||| | |||||||||||||||| |||||| || | || Sbjct 841584 GACCAGTCTGACCAGAGTTTCCTCGATGATGACCAGATTGCGGAAGGATTCGTTCTCACT 841525 Query 161288 TGTGTTGCATATCCTACTAGCGAT 161311 |||| || |||| |||| |||| Sbjct 841524 TGTGCGGCTTATCTTACTTTCGAT 841501 >seq8 Length=29345952 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/132 (78%), Gaps = 3/132 (2%) Strand=Plus/Plus Query 160424 TATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAA 160483 ||||||||| | |||||||||||||| |||| ||| |||||||||| || || ||||| Sbjct 6844674 TATGCCTCTAGA-ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAA 6844732 Query 160484 TATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTT 160543 || |||||||| || || || ||| | || || ||||| |||||||| || || | || Sbjct 6844733 CATTCTTATGCA-CCATTTCA-ATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATT 6844790 Query 160544 CTCTGCTATGCA 160555 ||||||||| Sbjct 6844791 TAGTGCTATGCA 6844802 Score = 82.4 bits (90), Expect = 9e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 160797 AACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAAC 160856 ||||| || |||||||| |||||||| || | | ||| ||||||| ||||| | || Sbjct 10479929 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTTTTAAT 10479870 Query 160857 ACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCATGA 160909 || ||||| || | | || |||||| |||||||||||||||||| |||| Sbjct 10479869 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGTATGA 10479817 >seq16 Length=18736220 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 161168 TATTCTTGTCGTGCTGGTGCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTA 161227 || ||||| ||||| ||| ||||||| ||| ||||||||| || | || ||| | || Sbjct 7499837 TACTCTTGCCGTGCCGGTTCTTGCTCGAGCTGCGCAGGTAAAGTTGTGTCTGGTTCGGTT 7499896 Query 161228 GACCAGTCTGACCAGTCCTTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACA 161287 ||||||||||||||| ||| | |||||||||||||||| || || | | || Sbjct 7499897 GACCAGTCTGACCAGAGTTTCCTCGATGATGACCAGATTGCTGAAGGGTTTGTCCTCACT 7499956 Query 161288 TGTGTTGCATATCCTACT 161305 |||| || ||||||||| Sbjct 7499957 TGTGCGGCGTATCCTACT 7499974 >seq1 Length=45320942 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 161168 TATTCTTGTCGTGCTGGTGCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTA 161227 || ||||| ||||||||| | ||||| |||||| || ||| || | || || || Sbjct 31077863 TACTCTTGCCGTGCTGGTTCGTGCTCAAGCTGTGCCGGCAAAGTTGTGTCTGGATTTGTT 31077922 Query 161228 GACCAGTCTGACCAGTCCTTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACA 161287 ||||||||||||||| ||| | |||||||||||||||| | || || || | || Sbjct 31077923 GACCAGTCTGACCAGAGTTTCCTCGATGATGACCAGATTGCTGCAGGGTTTGTTCTCACT 31077982 Query 161288 TGTGTTGCATATCCTAC 161304 |||| || |||||||| Sbjct 31077983 TGTGCGGCTTATCCTAC 31077999 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 161168 TATTCTTGTCGTGCTGGTGCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTA 161227 || ||||| ||||||||| | ||||| |||||| || ||| || | || || || Sbjct 31114812 TACTCTTGCCGTGCTGGTTCGTGCTCAAGCTGTGCCGGCAAAGTTGTGTCTGGATTTGTT 31114753 Query 161228 GACCAGTCTGACCAGTCCTTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACA 161287 ||||||||||||||| ||| | |||||||||||||||| | || || || | || Sbjct 31114752 GACCAGTCTGACCAGAGTTTCCTCGATGATGACCAGATTGCTGCAGGGTTTGTTCTCACT 31114693 Query 161288 TGTGTTGCATATCCTAC 161304 |||| || |||||||| Sbjct 31114692 TGTGCGGCTTATCCTAC 31114676 >seq3071 Length=6037 Score = 82.4 bits (90), Expect = 9e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 160797 AACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAAC 160856 ||||| || |||||||| |||||||| || | | ||| ||||||| ||||| | || Sbjct 1741 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTTTTAAT 1682 Query 160857 ACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCATGA 160909 || ||||| || | | || |||||| |||||||||||||||||| |||| Sbjct 1681 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGTATGA 1629 >seq11 Length=32467241 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 161168 TATTCTTGTCGTGCTGGTGCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTA 161227 || ||||| || || ||| | ||||| |||||| |||||| || | || || | || Sbjct 7692601 TACTCTTGCCGCGCCGGTTCCTGCTCGAGCTGTGCGGGTAAAGTTGTGTCCGGATCTGTT 7692542 Query 161228 GACCAGTCTGACCAGTCCTTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACA 161287 ||||||||||||||| ||| | |||||||||||||||| || || || | || Sbjct 7692541 GACCAGTCTGACCAGAGTTTCCTCGATGATGACCAGATTGCTGAAGGGTTTGTTCTCACT 7692482 Query 161288 TGTGTTGCATATCCTACT 161305 |||| || ||||||||| Sbjct 7692481 TGTGCGGCTTATCCTACT 7692464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559435838425200