Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq9 226 3e-54 seq14 165 1e-35 seq8 120 4e-22 seq60 91.5 2e-13 seq390 84.2 3e-11 seq3 82.4 9e-11 >seq9 Length=62778564 Score = 226 bits (250), Expect = 3e-54 Identities = 430/626 (69%), Gaps = 13/626 (2%) Strand=Plus/Minus Query 182741 CAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTTCCTCATCTATCC 182800 |||| | || | || |||||||| |||||||| || || || || || || ||||| Sbjct 56234949 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 56234890 Query 182801 TTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTT 182860 | || || || |||||| || | ||| |||||||| ||||| || || | || Sbjct 56234889 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 56234830 Query 182861 C---CTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTCCATATGATGGG 182917 | || || |||| |||||||| | || ||| |||| || | || ||| ||||||| Sbjct 56234829 CATCCTCTTTTTCCA--AGGGTTTC-ATAATTGGGCACTGAATTCATTTCATTTGATGGG 56234773 Query 182918 AGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGTCACAGTAGAGAA 182977 | |||| ||| |||| || | || ||| | | ||||| |||||| || ||||| || Sbjct 56234772 AATTGCCGGTGTACTTGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGA-AA 56234714 Query 182978 TACCTTGTAT--GAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGATTCCACTCAG 183035 || || ||| ||| |||| || ||||| | ||| || || | | | ||| Sbjct 56234713 TATTTTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAA 56234654 Query 183036 GAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTCGGGGTT 183095 | || || || ||||| ||||| || || || || |||||||||| |||||| |||| | Sbjct 56234653 GCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCT 56234594 Query 183096 GCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTT 183155 || ||| |||||| | |||||| || ||||||||||| ||||| || || | ||| | Sbjct 56234593 GCTTTTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTA 56234534 Query 183156 TGGGTCTCTTCTATTGGGATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTG 183215 || | | || ||| || | || || ||| | || || |||| |||| || | Sbjct 56234533 AGGATGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATT 56234474 Query 183216 AGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACAAAGAACATC 183275 ||||| ||| | ||||| |||||||| || || || || ||||| || || || || Sbjct 56234473 TCCCAAGAAATTTGTGCAGCGGAAGATCCGGACTT-GAAACTTTCTATACTAAAAATATT 56234415 Query 183276 CTTCTCAATGAAGGACTACGTGCTTGGTTGGCACCTGCCGAT---CAACCACATGAAAAC 183332 ||| | || ||||| | || ||||| |||| || ||| || || ||||||||| Sbjct 56234414 CTTTTAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAAC 56234355 Query 183333 TTCATCTTCCCTGAAGAAGTTCTACC 183358 | || ||| |||| || ||| |||| Sbjct 56234354 ATTATATTCACTGAGGAGGTTTTACC 56234329 >seq14 Length=28343526 Score = 165 bits (182), Expect = 1e-35 Identities = 199/271 (73%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 181318 GTGAATGGGAACTCTCTTACCGCTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTG 181377 |||| |||||||| || | | | ||||| || || ||||| ||||||||| || | Sbjct 20845009 GTGAGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATTGCTGTTGCATATTCAG 20845068 Query 181378 CTCCAGTCGCAGCAGCATCTGCTGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCT 181437 ||| || ||| | || || ||| ||| | ||| || | | |||||| ||| | Sbjct 20845069 ATCCTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATTGATCAAGGAAGTTTTT 20845128 Query 181438 CTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAG 181497 |||| ||||| || || ||||||||||| ||||||| ||| |||| |||||| | | Sbjct 20845129 CTGATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTCCAAACTG 20845188 Query 181498 AGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTT 181557 ||||||||||||| ||||| || || |||||||| ||||| || |||||||| || || | Sbjct 20845189 AGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCT 20845248 Query 181558 CACTGTTCAGTGCAATGCACGGTTCTTTGGT 181588 | || || ||||| ||||| |||| |||| Sbjct 20845249 CTCTTTTTAGTGCTATGCATAGTTCCCTGGT 20845279 >seq8 Length=29345952 Score = 120 bits (132), Expect = 4e-22 Identities = 106/130 (82%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 181458 ATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGCAT 181517 ||||||||||| ||||||| ||| |||| ||||| || |||||||||||||| ||||| Sbjct 6844686 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCA- 6844744 Query 181518 CCCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTCAGTGCAATGCAC 181577 || || || ||||| ||||| || |||||||| || || || || || ||||| ||||| Sbjct 6844745 CCATTTCA-ATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCAT 6844803 Query 181578 GGTTCTTTGG 181587 ||||||||| Sbjct 6844804 AGTTCTTTGG 6844813 >seq60 Length=523306 Score = 91.5 bits (100), Expect = 2e-13 Identities = 174/254 (69%), Gaps = 2/254 (1%) Strand=Plus/Plus Query 182553 TCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 182612 || || |||||| || | | | |||||| | | ||| |||| |||||| | || Sbjct 21486 TCTACTCCTGCTAATAGTTTAGCGCATTCTTTGATGTAACTGTGGGATCCTGAAGCACAA 21545 Query 182613 GGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGT 182672 || |||| || ||||| ||||| || || | ||| ||| || ||||||||| || Sbjct 21546 GGAGATTTTACTCGTTGGTGTCAACTAGGCGGTATGTGGGCTTTTGTTGCTCTCCACTGT 21605 Query 182673 GCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCG-CCTGATTGGAAT 182731 || ||| | | || ||||| ||| | |||||||||||||||| ||| || | | Sbjct 21606 GCTTTCACATTAATAGGTTTTATGTTGCATTAATTTGAACTTGCTCGATCTG-TTCAATT 21664 Query 182732 CAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTTCCT 182791 ||||||| ||||| |||| || | ||||| |||| ||| || || || || || Sbjct 21665 GCGACCTTATAATGCAGTTGCATTCTTTGGTCTAATTGATGTTTTTGTTTCCGTCTTTCT 21724 Query 182792 CATCTATCCTTTGG 182805 || |||||| ||| Sbjct 21725 AATTTATCCTCTGG 21738 >seq390 Length=101491 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 182654 TTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACT 182713 ||| || |||||||| ||||| ||||| | || ||||| ||| | | ||||||||||| Sbjct 2251 TTTTGTTGCTCTCCATGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACT 2310 Query 182714 TGCTCG-CCTGATTGGAATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGC 182770 |||||| ||| || | | ||||||| ||||| || || || |||||||| ||||| Sbjct 2311 TGCTCGATCTG-TTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGC 2367 >seq3 Length=43957692 Score = 82.4 bits (90), Expect = 9e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 179470 GATGATCAGTATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGT 179529 || || ||||| || | || || |||||||||||||| || || | ||||||||| Sbjct 14187997 GACGACCAGTACATATTGGATGCGGCTGAAGAAGCAGGAGTTGACTTGCCTTACTCTTGC 14188056 Query 179530 CGTGCTGGTGCTTGTTCATCTTGTGCTGGTAAATTAGAGAGTGGATCTGTTGATCAAAGC 179589 | |||||||| ||||| | || |||||||| | ||||| || ||||| || Sbjct 14188057 AGAGCTGGTGCGTGTTCCACCTGCGCTGGTAATATCGAGAGAGGCCAAGTTGACCAGTCT 14188116 Query 179590 GATCAATCGTTTTTGGATGACGATCAAATGGAGTCGGGATTTATTCTGACTTGCGTATCT 179649 ||| |||||| | || || ||||| |||||| || | | | ||||||| || || Sbjct 14188117 GATGGTTCGTTTCTTGAGGATGATCACATGGAGAAAGGTTATGTCTTGACTTGTGTGGCT 14188176 Query 179650 TATCC 179654 || || Sbjct 14188177 TACCC 14188181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614542724210880