Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq9 223 5e-53 seq14 111 2e-19 >seq9 Length=62778564 Score = 223 bits (246), Expect = 5e-53 Identities = 418/611 (68%), Gaps = 5/611 (1%) Strand=Plus/Minus Query 176242 CATTCAGTGGTCCTATCGCTGTATTTGTCAGTGTGTTTCTTCTATACCCACTAGGTCAAT 176301 ||||| |||||| || ||||| ||||| || ||||| | || ||||||||||||| Sbjct 56234938 CATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCCACTAGGTCAAT 56234879 Query 176302 CTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTATTGTTTC 176361 || |||||||||| || |||||||| || || || ||| ||||| | | ||| Sbjct 56234878 CTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTTTT 56234819 Query 176362 TTCAGGGTTTCCACAACTGGACACTGAACCCCTTCCATATGATGGGAGTTGCTGGTATAC 176421 | || || || || || ||| ||||||| | || ||| |||||||| |||| ||| ||| Sbjct 56234818 TCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGATGGGAATTGCCGGTGTAC 56234759 Query 176422 TAGGTGGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAAA-ATACCCTATATGAA 176480 | || | || || ||| || || |||| | |||||| |||| || ||| |||| Sbjct 56234758 TTGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGAAATATTTTTTATCTGAA 56234699 Query 176481 GATGGAGAACAGAACAACACCTTCACTGCGTTCGATTCCACGCAGGAGGAAGAGACCTAT 176540 |||| || || | || ||| || | | | || | ||||| || ||| Sbjct 56234698 AATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCCGAAGAAACTTAT 56234639 Query 176541 TCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAATAAG 176600 || ||||| || || |||||||| ||||| | |||||| |||| ||| ||| ||||| Sbjct 56234638 TCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCTTTTTCCAATAAA 56234579 Query 176601 CGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCAAGTATT 176660 | |||| | || ||||||||||| ||||| || || | ||| | || | | || Sbjct 56234578 CATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGGATGAGTGCTCTT 56234519 Query 176661 GGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGATTAGA 176720 | || | || || ||| | || || |||| |||| || | |||||| ||| | Sbjct 56234518 GTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCCCAAGAAATTTGT 56234459 Query 176721 GCAGCAGAAGATCCTGAGTTTGAAACTTTCTACACAAAGAACATCCTTCTTAACGAAGGA 176780 ||||| |||||||| || ||||||||||||| || || || || ||| | |||||||| Sbjct 56234458 GCAGCGGAAGATCCGGA-CTTGAAACTTTCTATACTAAAAATATTCTTTTAAACGAAGGT 56234400 Query 176781 CTAAGAGCATGGATGGCACCTGTGGAT---CAACCACATGAGTCATTTGTATTCCCAGAA 176837 | | | |||||||| || |||| || || ||||| || ||||| | || Sbjct 56234399 ATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATTATATTCACTGAG 56234340 Query 176838 GAAGTTCTACC 176848 || ||| |||| Sbjct 56234339 GAGGTTTTACC 56234329 >seq14 Length=28343526 Score = 111 bits (122), Expect = 2e-19 Identities = 193/281 (69%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 174795 TATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTA 174854 ||||||| ||||||||||||| || || | ||||| | |||||||| ||| Sbjct 20844999 TATATGGATTGTGAGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATTGCTGTT 20845058 Query 174855 GCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAA 174914 ||||| || | || |||||| | ||| | || ||| | ||| || | | |||| Sbjct 20845059 GCATATTCAGATCCTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATTGATCAA 20845118 Query 174915 GGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGTC 174974 || || || || ||||| | || |||||||| || ||||||| ||| | || Sbjct 20845119 GGAAGTTTTTCTGATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTA 20845178 Query 174975 TTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTC 175034 |||||| | || || ||||| | |||||||| || |||||||| || || || ||||| Sbjct 20845179 TTCCAAACTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 20845238 Query 175035 TTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGT 175075 ||||| || || | || || |||||| |||| || || Sbjct 20845239 TTCGGCGGCTCTCTTTTTAGTGCTATGCATAGTTCCCTGGT 20845279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729840676326480