Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq14 172 7e-38 seq8 120 4e-22 seq9 104 3e-17 seq28 96.9 4e-15 seq16 95.1 1e-14 seq60 86.0 8e-12 seq11 86.0 8e-12 seq3 82.4 9e-11 >seq14 Length=28343526 Score = 172 bits (190), Expect = 7e-38 Identities = 203/272 (75%), Gaps = 2/272 (1%) Strand=Plus/Plus Query 178186 GTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTG 178245 |||||||||||||| | | || | ||||| || || ||||| ||| ||||| || | Sbjct 20845009 GTGAGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATTGCTGTTGCATATTCAG 20845068 Query 178246 CTCCAGTAGCAGCAGC-ATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTT 178304 ||| || ||| | || || || || ||| || ||| || | | |||||| ||| Sbjct 20845069 ATCCTGTTGCAACTGCTATTGG-TGTTTTCTTGATCTGCCCAATTGATCAAGGAAGTTTT 20845127 Query 178305 TCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCA 178364 ||||| ||||| || || ||||||||||| ||||||| ||| |||| |||||| | Sbjct 20845128 TCTGATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTCCAAACT 20845187 Query 178365 GAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGT 178424 || ||||||||||| |||||||| || |||||||| ||||| || ||||||||||| || Sbjct 20845188 GAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGC 20845247 Query 178425 TCACTGTTCAGTGCAATGCACGGTTCTTTGGT 178456 || || || ||||| ||||| |||| |||| Sbjct 20845248 TCTCTTTTTAGTGCTATGCATAGTTCCCTGGT 20845279 Score = 104 bits (114), Expect = 3e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 176350 TCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGTCGTGCTGGTGCTT 176409 |||| ||||||||||| ||||| || | || | ||||||||| ||||||||| ||| Sbjct 23727191 TCCTCGACGCTGCTGAGGAAGCCGGAATCGACTTGCCTTACTCTTGCCGTGCTGGTTCTT 23727250 Query 176410 GTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGATCAGAGTGATCAGTCTTTCC 176469 | || ||||| || ||| | | | ||| |||||||| ||| ||| ||| ||||| Sbjct 23727251 GCTCCAGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCC 23727310 Query 176470 TGGATGATGATCAAATTGAATCTGGTTTTATTCTGACTTGCGTATCTTATCCTACTAGTG 176529 | |||||||| || |||| || || |||| ||||| | ||||||||||| || Sbjct 23727311 TCGATGATGACCAGATTGCTGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTACTTCTG 23727370 Query 176530 AT 176531 || Sbjct 23727371 AT 23727372 >seq8 Length=29345952 Score = 120 bits (132), Expect = 4e-22 Identities = 105/130 (81%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 178326 ATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCAC 178385 ||||||||||| ||||||| ||| |||| ||||| || || ||||||||||| |||||| Sbjct 6844686 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCAC 6844745 Query 178386 CCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCAC 178445 | ||| ||||| ||||| || ||||||||||| || || || || ||||| ||||| Sbjct 6844746 CATTTC--AATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCAT 6844803 Query 178446 GGTTCTTTGG 178455 ||||||||| Sbjct 6844804 AGTTCTTTGG 6844813 >seq9 Length=62778564 Score = 104 bits (114), Expect = 3e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 176350 TCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGTCGTGCTGGTGCTT 176409 |||| |||||||| || |||||||| | || | ||||||||| ||||| ||| ||| Sbjct 18477108 TCCTCGACGCTGCGGAGGAAGCAGGGATCGACTTGCCTTACTCTTGCCGTGCCGGTTCTT 18477049 Query 176410 GTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGATCAGAGTGATCAGTCTTTCC 176469 | || ||||| || ||| | | | ||||| |||||| ||| ||| ||| ||||| Sbjct 18477048 GCTCGAGCTGTGCAGGTAAAGTTGTGTCTGGTTTTGTTGACCAGTCTGACCAGAGTTTCC 18476989 Query 176470 TGGATGATGATCAAATTGAATCTGGTTTTATTCTGACTTGCGTATCTTATCCTACTAGTG 176529 | |||||||| || |||| | || ||| |||| || || | ||||||||||| || Sbjct 18476988 TCGATGATGACCAGATTGCTGCAGGGTTTGTTCTCACCTGTGCGGCTTATCCTACTTCTG 18476929 Query 176530 AT 176531 || Sbjct 18476928 AT 18476927 Score = 82.4 bits (90), Expect = 9e-11 Identities = 137/194 (71%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 178067 TGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAG-TGGCTGTATAACG 178125 |||| | || || || |||||||| |||| ||||| ||||||| ||||| || || Sbjct 10190845 TGGTTTGCATTTTTACGCCATCTGG-AAGCTGCATCCGTTGATGAAATGGCTATACAAAC 10190903 Query 178126 GTGGTC-CTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGCATACATGGGA 178184 ||||| ||| |||| | || | ||||| | ||||| | | || ||||| Sbjct 10190904 GTGGTTGCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGT 10190963 Query 178185 CGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCT 178244 ||||||||||||||| | |||| | |||||||| || ||||| ||| ||||| || Sbjct 10190964 CGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCA 10191023 Query 178245 GCTCCAGTAGCAGC 178258 |||| | || |||| Sbjct 10191024 GCTCTAATACCAGC 10191037 >seq28 Length=1539140 Score = 96.9 bits (106), Expect = 4e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 176350 TCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGTCGTGCTGGTGCTT 176409 |||||||||||||||| ||||| || | || | ||||||||| ||||||||| | | Sbjct 841682 TCCTTGACGCTGCTGAGGAAGCCGGAATCGACTTGCCTTACTCTTGCCGTGCTGGTTCCT 841623 Query 176410 GTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGATCAGAGTGATCAGTCTTTCC 176469 | || ||||| || ||| | | | ||| |||||||| ||| ||| ||| ||||| Sbjct 841622 GCTCGAGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCC 841563 Query 176470 TGGATGATGATCAAATTGAATCTGGTTTTATTCTGACTTGCGTATCTTATCCTACT 176525 | |||||||| || |||| || || |||| ||||| | |||||| |||| Sbjct 841562 TCGATGATGACCAGATTGCGGAAGGATTCGTTCTCACTTGTGCGGCTTATCTTACT 841507 >seq16 Length=18736220 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 176350 TCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGTCGTGCTGGTGCTT 176409 |||| ||||||||||| |||||||| | || | ||||||||| ||||| ||| ||| Sbjct 7499799 TCCTCGACGCTGCTGAGGAAGCAGGGATCGACTTGCCTTACTCTTGCCGTGCCGGTTCTT 7499858 Query 176410 GTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGATCAGAGTGATCAGTCTTTCC 176469 | || || || || ||| | | | |||||| ||||| ||| ||| ||| ||||| Sbjct 7499859 GCTCGAGCTGCGCAGGTAAAGTTGTGTCTGGTTCGGTTGACCAGTCTGACCAGAGTTTCC 7499918 Query 176470 TGGATGATGATCAAATTGAATCTGGTTTTATTCTGACTTGCGTATCTTATCCTACTAGTG 176529 | |||||||| || |||| || ||| | || ||||| | | ||||||||| || Sbjct 7499919 TCGATGATGACCAGATTGCTGAAGGGTTTGTCCTCACTTGTGCGGCGTATCCTACTTCTG 7499978 Query 176530 AT 176531 || Sbjct 7499979 AT 7499980 >seq60 Length=523306 Score = 86.0 bits (94), Expect = 8e-12 Identities = 173/254 (68%), Gaps = 2/254 (1%) Strand=Plus/Plus Query 179415 TCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 179474 || || |||||| || | | | |||||| | | ||| |||| |||||| | || Sbjct 21486 TCTACTCCTGCTAATAGTTTAGCGCATTCTTTGATGTAACTGTGGGATCCTGAAGCACAA 21545 Query 179475 GGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGT 179534 || |||| || ||||| ||||| || || | ||| ||| || ||||||||| || Sbjct 21546 GGAGATTTTACTCGTTGGTGTCAACTAGGCGGTATGTGGGCTTTTGTTGCTCTCCACTGT 21605 Query 179535 GCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCG-CCTGATTGGTAT 179593 || ||| | | || ||||| ||| | |||||||||||||||| ||| || | Sbjct 21606 GCTTTCACATTAATAGGTTTTATGTTGCATTAATTTGAACTTGCTCGATCTG-TTCAATT 21664 Query 179594 CAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTCCT 179653 ||||||| ||||| |||| || | ||||| |||| ||| || || || || || Sbjct 21665 GCGACCTTATAATGCAGTTGCATTCTTTGGTCTAATTGATGTTTTTGTTTCCGTCTTTCT 21724 Query 179654 CATCTATCCTTTGG 179667 || |||||| ||| Sbjct 21725 AATTTATCCTCTGG 21738 >seq11 Length=32467241 Score = 86.0 bits (94), Expect = 8e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 176350 TCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGTCGTGCTGGTGCTT 176409 |||| |||||||| || ||||| || | || | ||||||||| || || ||| | | Sbjct 7692639 TCCTCGACGCTGCGGAGGAAGCCGGGATCGACTTGCCTTACTCTTGCCGCGCCGGTTCCT 7692580 Query 176410 GTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGATCAGAGTGATCAGTCTTTCC 176469 | || ||||| || ||| | | | || |||||||| ||| ||| ||| ||||| Sbjct 7692579 GCTCGAGCTGTGCGGGTAAAGTTGTGTCCGGATCTGTTGACCAGTCTGACCAGAGTTTCC 7692520 Query 176470 TGGATGATGATCAAATTGAATCTGGTTTTATTCTGACTTGCGTATCTTATCCTACTAGTG 176529 | |||||||| || |||| || ||| |||| ||||| | ||||||||||| || Sbjct 7692519 TCGATGATGACCAGATTGCTGAAGGGTTTGTTCTCACTTGTGCGGCTTATCCTACTTCTG 7692460 Query 176530 AT 176531 || Sbjct 7692459 AT 7692458 >seq3 Length=43957692 Score = 82.4 bits (90), Expect = 9e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 176337 GATGATCAGTATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGT 176396 || || ||||| || | || || |||||||||||||| || || | ||||||||| Sbjct 14187997 GACGACCAGTACATATTGGATGCGGCTGAAGAAGCAGGAGTTGACTTGCCTTACTCTTGC 14188056 Query 176397 CGTGCTGGTGCTTGTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGATCAGAGT 176456 | |||||||| ||||| | || ||||| || | ||||| || ||||| ||| | Sbjct 14188057 AGAGCTGGTGCGTGTTCCACCTGCGCTGGTAATATCGAGAGAGGCCAAGTTGACCAGTCT 14188116 Query 176457 GATCAGTCTTTCCTGGATGATGATCAAATTGAATCTGGTTTTATTCTGACTTGCGTATCT 176516 ||| || || || || |||||||| || || |||| | | ||||||| || || Sbjct 14188117 GATGGTTCGTTTCTTGAGGATGATCACATGGAGAAAGGTTATGTCTTGACTTGTGTGGCT 14188176 Query 176517 TATCC 176521 || || Sbjct 14188177 TACCC 14188181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605935772880480