Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq9 183 3e-41 seq14 172 6e-38 seq8 113 5e-20 seq390 89.7 6e-13 seq3071 87.8 2e-12 seq16 84.2 2e-11 seq18 82.4 8e-11 >seq9 Length=62778564 Score = 183 bits (202), Expect = 3e-41 Identities = 429/643 (67%), Gaps = 7/643 (1%) Strand=Plus/Minus Query 160279 CAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTTGTCAGCGTATTCCTCATCTACCC 160338 |||| | || | ||||||||||| |||||||| ||||| || || || || || || Sbjct 56234949 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 56234890 Query 160339 ATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATT 160398 | | ||||| || |||||| || | || ||||| || || || || ||| |||| Sbjct 56234889 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 56234830 Query 160399 CCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGATGGGAGT 160458 | | | || | ||||| ||||| || ||| | || || | || ||| |||||||| | Sbjct 56234829 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGATGGGAAT 56234770 Query 160459 TGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCCATGGCGTTACTGTAGAGAACAC 160518 ||| ||| |||| || | || ||| | | || || |||| | ||||||||| || | Sbjct 56234769 TGCCGGTGTACTTGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGA-AATAT 56234711 Query 160519 ACTGTA--TGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAA 160576 | || |||| |||| || ||||||| || || ||| | | | || | Sbjct 56234710 TTTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCC 56234651 Query 160577 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCG 160636 ||||| |||||||| |||||||| || |||||||| ||||| | ||||| || ||| Sbjct 56234650 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCT 56234591 Query 160637 TTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGG 160696 ||||| || || | ||| | || || || ||||| ||||| || || | ||| | || Sbjct 56234590 TTTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGG 56234531 Query 160697 ACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGT 160756 | | ||| || | ||||| ||| | || || |||| || | ||| | Sbjct 56234530 ATGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCC 56234471 Query 160757 CAAGAGATTAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAGAACATCCTA 160816 ||||| ||| | ||||| |||||||| | | |||| || ||||| || || || || || Sbjct 56234470 CAAGAAATTTGTGCAGCGGAAGATCC-GGACTTGAAACTTTCTATACTAAAAATATTCTT 56234412 Query 160817 CTGAATGAAGGACTACGTGCATGGTTAGCACCT---GCCGACCAACCCCATGAGAACTTT 160873 | || ||||| | || | ||| | || || | | || || ||||| ||| || Sbjct 56234411 TTAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATT 56234352 Query 160874 ATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 160916 || ||| | || || ||| | || | || | | | ||||||| Sbjct 56234351 ATATTCACTGAGGAGGTTTTACCACGTGGAAGCACTCTTTAAT 56234309 >seq14 Length=28343526 Score = 172 bits (190), Expect = 6e-38 Identities = 200/270 (74%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 158706 TATATGGGACGTGAATGGGAACTTTCATACCGCTTAGGTATGCGCCCCTGGATCTGTGTA 158765 ||||||| |||| ||||||||| | | | | ||||| || || ||||| ||| Sbjct 20844999 TATATGGATTGTGAGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATTGCTGTT 20845058 Query 158766 GCATATTCTGCACCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAA 158825 |||||||| | || || || | || || ||| ||| | ||| || | | |||| Sbjct 20845059 GCATATTCAGATCCTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATTGATCAA 20845118 Query 158826 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTA 158885 || ||| || ||| ||||||||| || |||||||||||||| |||| ||| ||||| Sbjct 20845119 GGAAGTTTTTCTGATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTA 20845178 Query 158886 TTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTA 158945 |||||| | || |||||||| ||||||||||| || || ||| | ||||| ||||| ||| Sbjct 20845179 TTCCAAACTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 20845238 Query 158946 TTCGGTGGATCTCTTTTCTCTGCTATGCAT 158975 ||||| || |||||||| |||||||||| Sbjct 20845239 TTCGGCGGCTCTCTTTTTAGTGCTATGCAT 20845268 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 159555 GACGCTGCTGAGGAAGCAGGTGTAGATGCTCCGTATTCATGTCGTGCTGGTGCTTGTAGC 159614 ||||||||||||||||| || | || || || || || ||||||||| |||| | Sbjct 23727196 GACGCTGCTGAGGAAGCCGGAATCGACTTGCCTTACTCTTGCCGTGCTGGTTCTTGCTCC 23727255 Query 159615 ACATGTGCTGGTAAGATTGAGAGCGGGACAGTTGACCAAAGTGACCAATCTTTCTTGGAC 159674 | ||||| ||||| ||| | || | |||||||| |||||| |||| | || Sbjct 23727256 AGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCCTCGAT 23727315 Query 159675 GATGATCAACTCGCTGAAGGATTTCTTCTCACTTGTGTCTCCTACCCTACATCAGACGTA 159734 ||||| || | ||||||||||| |||||||||||| | || ||||| || || || Sbjct 23727316 GATGACCAGATTGCTGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTACTTCTGATGTT 23727375 Query 159735 ACTAT 159739 || || Sbjct 23727376 ACCAT 23727380 >seq8 Length=29345952 Score = 113 bits (124), Expect = 5e-20 Identities = 106/133 (80%), Gaps = 3/133 (2%) Strand=Plus/Plus Query 158843 TATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAA 158902 ||||||||| | |||||||||||||| |||| ||| |||||||||| || || ||||| Sbjct 6844674 TATGCCTCTAGA-ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAA 6844732 Query 158903 CATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTT 158962 ||| |||||||||| ||| ||| | ||||| ||||| |||||||| || || || || Sbjct 6844733 CATTCTTATGCACCATTTC--AATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATT 6844790 Query 158963 CTCTGCTATGCAT 158975 |||||||||| Sbjct 6844791 TAGTGCTATGCAT 6844803 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 159216 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 159275 ||||| || |||||||| |||||||| || | ||||| |||| || ||||| || || Sbjct 10479929 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTTTTAAT 10479870 Query 159276 ACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCATGA 159328 || ||||| ||| | | |||||||| || ||||||||||||||| |||| Sbjct 10479869 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGTATGA 10479817 >seq390 Length=101491 Score = 89.7 bits (98), Expect = 6e-13 Identities = 96/123 (78%), Gaps = 3/123 (2%) Strand=Plus/Plus Query 160192 TTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACT 160251 |||||| || ||||||||||| ||||| |||| || || ||| | ||||| |||||||| Sbjct 2251 TTTTGTTGCTCTCCATGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACT 2310 Query 160252 GGCACG-TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTG 160310 || || ||| || | | || ||||| ||||| || || ||||||||||| ||||| | Sbjct 2311 TGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGC-G 2368 Query 160311 TCT 160313 ||| Sbjct 2369 TCT 2371 Score = 86.0 bits (94), Expect = 7e-12 Identities = 95/123 (77%), Gaps = 3/123 (2%) Strand=Plus/Plus Query 160192 TTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACT 160251 |||||| || ||||||||||| ||||| |||| || || || | ||||| |||||||| Sbjct 9888 TTTTGTTGCTCTCCATGGTGCTTTCGCATTAATAGGTTTTTTGTTACGTCAATTTGAACT 9947 Query 160252 GGCACG-TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTG 160310 || || ||| || | | || ||||| ||||| || || ||||||||||| ||||| | Sbjct 9948 TGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGC-G 10005 Query 160311 TCT 160313 ||| Sbjct 10006 TCT 10008 >seq3071 Length=6037 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 159216 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 159275 ||||| || |||||||| |||||||| || | ||||| |||| || ||||| || || Sbjct 1741 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTTTTAAT 1682 Query 159276 ACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCATGA 159328 || ||||| ||| | | |||||||| || ||||||||||||||| |||| Sbjct 1681 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGTATGA 1629 >seq16 Length=18736220 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 159555 GACGCTGCTGAGGAAGCAGGTGTAGATGCTCCGTATTCATGTCGTGCTGGTGCTTGTAGC 159614 |||||||||||||||||||| | || || || || || ||||| ||| |||| Sbjct 7499804 GACGCTGCTGAGGAAGCAGGGATCGACTTGCCTTACTCTTGCCGTGCCGGTTCTTGCTCG 7499863 Query 159615 ACATGTGCTGGTAAGATTGAGAGCGGGACAGTTGACCAAAGTGACCAATCTTTCTTGGAC 159674 | || || ||||| ||| | || | |||||||| |||||| |||| | || Sbjct 7499864 AGCTGCGCAGGTAAAGTTGTGTCTGGTTCGGTTGACCAGTCTGACCAGAGTTTCCTCGAT 7499923 Query 159675 GATGATCAACTCGCTGAAGGATTTCTTCTCACTTGTGTCTCCTACCCTACATCAGACGTA 159734 ||||| || | |||||||| ||| | |||||||||| | || ||||| || || || Sbjct 7499924 GATGACCAGATTGCTGAAGGGTTTGTCCTCACTTGTGCGGCGTATCCTACTTCTGATGTT 7499983 Query 159735 ACTATC 159740 || ||| Sbjct 7499984 ACCATC 7499989 >seq18 Length=77673080 Score = 82.4 bits (90), Expect = 8e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 159899 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 159958 ||||| || | || |||||| | |||| || ||||||||||| || |||||||| Sbjct 3654925 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 3654984 Query 159959 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTC 160018 || | || |||| ||| ||| | || | || |||||| | || || ||||| || Sbjct 3654985 CTATTGCTCTTTCCTTGTGCCTATTTCACTTTGGGGGGTTGGTTCACAGGTACAACCTTT 3655044 Query 160019 GCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGT 160066 | ||| | |||||| |||||| | |||||||||||| | || ||| Sbjct 3655045 GTAACTTCATCGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGT 3655092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552406294903680