Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq9 230 3e-55 seq14 201 1e-46 seq8 111 2e-19 seq3 98.7 1e-15 seq390 86.0 8e-12 seq3071 82.4 9e-11 >seq9 Length=62778564 Score = 230 bits (254), Expect = 3e-55 Identities = 428/624 (69%), Gaps = 7/624 (1%) Strand=Plus/Minus Query 180401 CAATGCTATTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCC 180460 |||| | || ||||||||||||| || ||||| ||||| || ||||| || || || Sbjct 56234949 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 56234890 Query 180461 ACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATT 180520 ||| ||||| || ||||||||||| || |||||| ||||| || || ||| |||| Sbjct 56234889 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 56234830 Query 180521 CCTACTCTTTCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGT 180580 | | |||||| | || || || || || ||| | || || | || ||| |||||||| | Sbjct 56234829 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGATGGGAAT 56234770 Query 180581 TGCTGGTATACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACAC 180640 ||| ||| |||| || | || || ||| || || |||| | ||||| || || | Sbjct 56234769 TGCCGGTGTACTTGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGA-AATAT 56234711 Query 180641 ACTGTA--TGAAGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAG 180698 | || |||| |||| || ||||| | || || ||| | ||| |||| Sbjct 56234710 TTTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCC 56234651 Query 180699 GAGGAAACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCA 180758 || |||||||| || |||||||| || |||||||| ||||| | ||||| || ||| Sbjct 56234650 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCT 56234591 Query 180759 TTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGG 180818 ||||| || || | ||| | || || || ||||| ||||| || || | ||| || || Sbjct 56234590 TTTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGG 56234531 Query 180819 ACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGT 180878 | || ||| || | ||||| ||| | ||||| |||| || | ||| | Sbjct 56234530 ATGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCC 56234471 Query 180879 CAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTA 180938 ||||| || | ||||| |||||||| || || || || ||||| || || || || || Sbjct 56234470 CAAGAAATTTGTGCAGCGGAAGATCCGGACTT-GAAACTTTCTATACTAAAAATATTCTT 56234412 Query 180939 TTGAATGAAGGACTACGTGCATGGTTGGCACCTGCCGAT---CAACCACACGAAAACTTC 180995 || || ||||| | || | ||| |||| || ||| || || || |||||| | Sbjct 56234411 TTAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATT 56234352 Query 180996 ATCTTCCCTGAAGAAGTTCTACCA 181019 || ||| |||| || ||| ||||| Sbjct 56234351 ATATTCACTGAGGAGGTTTTACCA 56234328 Score = 96.9 bits (106), Expect = 4e-15 Identities = 252/368 (68%), Gaps = 15/368 (4%) Strand=Plus/Plus Query 178900 GTTGGTTGGTTCGGTGTGCTGATGATTCCTACGTTGCTTG-CTGCAACTATCTGTTTCAT 178958 ||||| ||||| ||||| ||||||| ||||| || ||| | || ||| || |||| | Sbjct 10190664 GTTGGATGGTTTGGTGTTTTGATGATCCCTACCTTAATTGACCGCTACT-TCCGTTT--T 10190720 Query 178959 CGTTGCTTTCGTAGCAGCA-CCTCCCGTCGATATTGACGGCATCCGTGAACCCGTCG-CT 179016 || ||| | || || |||| || |||||||| | || ||||||| || || Sbjct 10190721 TATTAGATTCATTGCTGCTTCCTCTAGTAGATATTGAGTGTATT-GTGAACCTGTTTTCT 10190779 Query 179017 GGTTCACTCATGTATGG--AAACAACATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACG 179074 ||| | || | || || |||||| || | || ||||| | | | | || | | Sbjct 10190780 GGT-CTCTTCTTTAAGGTGAAACAATATTAGTTCCGGTGCATTATTTCTACTGTCTCAGG 10190838 Query 179075 -CAAT-TGGTCTACACTTCTACCCCATCTGGGAAGCAGCATCACTCGATGAG-TGGCTGT 179131 | || |||| | || || ||| |||||||| |||| ||||| | ||||| ||||| | Sbjct 10190839 GCTATGTGGTTTGCATTTTTACGCCATCTGG-AAGCTGCATCCGTTGATGAAATGGCTAT 10190897 Query 179132 ATAACGGTGGTC-CTTTCCAACTGGTAGTCTTCCACTTCCTTATCGGCATCTATGCCTAT 179190 | || ||||| ||| |||| | || | ||||| | | || | | ||| Sbjct 10190898 ACAAACGTGGTTGCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTAT 10190957 Query 179191 ATGGGACGTGAGTGGGAACTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCA 179250 ||||| ||||||||||||||| || |||||| ||||||||||| ||||| ||||||| Sbjct 10190958 ATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCA 10191017 Query 179251 TACTCTGC 179258 || || || Sbjct 10191018 TATTCAGC 10191025 >seq14 Length=28343526 Score = 201 bits (222), Expect = 1e-46 Identities = 206/269 (77%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 179188 TATATGGGACGTGAGTGGGAACTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTT 179247 ||||||| |||||||||||||| || | |||| ||||| ||||| ||||| |||| Sbjct 20844999 TATATGGATTGTGAGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATTGCTGTT 20845058 Query 179248 GCATACTCTGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAA 179307 ||||| || | || || || |||| | || || ||| | ||| || | | |||| Sbjct 20845059 GCATATTCAGATCCTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATTGATCAA 20845118 Query 179308 GGTTCTTTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTA 179367 || ||| |||||| ||||||||| || |||||||||||||| |||| ||| ||||| Sbjct 20845119 GGAAGTTTTTCTGATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTA 20845178 Query 179368 TTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTA 179427 |||||| | || |||||||| ||||||||||| || || ||| | ||||| ||||| ||| Sbjct 20845179 TTCCAAACTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 20845238 Query 179428 TTCGGTGGATCTCTTTTCTCTGCTATGCA 179456 ||||| || |||||||| ||||||||| Sbjct 20845239 TTCGGCGGCTCTCTTTTTAGTGCTATGCA 20845267 >seq8 Length=29345952 Score = 111 bits (122), Expect = 2e-19 Identities = 105/132 (80%), Gaps = 3/132 (2%) Strand=Plus/Plus Query 179325 TATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAA 179384 ||||||||| | |||||||||||||| |||| ||| |||||||||| || || ||||| Sbjct 6844674 TATGCCTCTAGA-ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAA 6844732 Query 179385 CATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTT 179444 ||| |||||||||| ||| ||| | ||||| ||||| |||||||| || || || || Sbjct 6844733 CATTCTTATGCACCATTTC--AATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATT 6844790 Query 179445 CTCTGCTATGCA 179456 ||||||||| Sbjct 6844791 TAGTGCTATGCA 6844802 Score = 82.4 bits (90), Expect = 9e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 179698 AACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAAC 179757 ||||| || |||||||| |||||||| || | |||| ||||||||||||| |||| Sbjct 10479929 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTTTTAAT 10479870 Query 179758 ACATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGA 179810 || ||||| || | | |||||||| | ||||||||||||||| |||| Sbjct 10479869 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGTATGA 10479817 >seq3 Length=43957692 Score = 98.7 bits (108), Expect = 1e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177379 AAGACGATCAGTACATCCTCGACGCCGCTGAAGAAGCAGGTGTTGATATTAATTACTCAT 177438 ||||||| |||||||| | || || |||||||||||||| ||||| | |||||| | Sbjct 14187995 AAGACGACCAGTACATATTGGATGCGGCTGAAGAAGCAGGAGTTGACTTGCCTTACTCTT 14188054 Query 177439 GCCGCGCTGGTGCTTGTTCATCCTGTGCTGGTAAACTTGAGAGTGGTAGTGTAGATCAAA 177498 || | |||||||| ||||| |||| |||||||| | ||||| || || || || Sbjct 14188055 GCAGAGCTGGTGCGTGTTCCACCTGCGCTGGTAATATCGAGAGAGGCCAAGTTGACCAGT 14188114 Query 177499 GCGATCAATCGTTCTTGGATGACGATCAAATGGAGTCAGGATTTATTCTGACCTGTGTGT 177558 ||| ||||| | || || ||||| |||||| ||| | | | |||| |||||| Sbjct 14188115 CTGATGGTTCGTTTCTTGAGGATGATCACATGGAGAAAGGTTATGTCTTGACTTGTGTGG 14188174 Query 177559 CATATCC 177565 | || || Sbjct 14188175 CTTACCC 14188181 >seq390 Length=101491 Score = 86.0 bits (94), Expect = 8e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 180314 TTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTTATGCTACGCCAGTTTGAACT 180373 ||| || |||||||| ||||| ||||| |||| || |||||| |||| || |||||||| Sbjct 2251 TTTTGTTGCTCTCCATGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACT 2310 Query 180374 GGCACGTCTTATTGGTATCCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATCGC 180430 || || | || | || ||||| ||||| || |||||||||||||| || || Sbjct 2311 TGCTCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGC 2367 >seq3071 Length=6037 Score = 82.4 bits (90), Expect = 9e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 179698 AACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAAC 179757 ||||| || |||||||| |||||||| || | |||| ||||||||||||| |||| Sbjct 1741 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTTTTAAT 1682 Query 179758 ACATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGA 179810 || ||||| || | | |||||||| | ||||||||||||||| |||| Sbjct 1681 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGTATGA 1629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610255246596480