Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq8 127 3e-24 seq159 113 6e-20 seq6 111 2e-19 >seq8 Length=29345952 Score = 127 bits (140), Expect = 3e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | ||| | ||||||| ||| | || | |||||| |||| |||||| Sbjct 15956781 TCCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACC 15956722 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 |||||| | |||||||| ||| ||| ||||||||| | || || || || || || Sbjct 15956721 GTTAGATGTTCCATTTGTGCCACGAATGTAACTTCCTGTCGCACGGATGTTGTGAACTGA 15956662 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||||||||| || || |||| || | || || ||||||||| |||||||| Sbjct 15956661 AACACCTATTCCCCCAGCTGATTTACTTATAACTGCGCACTCTTTCAATGTATCATATAT 15956602 Query 69930 ACCCTCTATGCTATCATCTATCATG 69954 ||||| ||||||||||| ||||| Sbjct 15956601 TCCCTCAATGCTATCATCCTTCATG 15956577 Score = 104 bits (114), Expect = 3e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | ||| | ||||| | ||| | || | |||||| |||| |||||| Sbjct 19410921 TCCTCCTTGGTCAACGTAGCGAGCAGTATCATTGAAAACACGCAGCATTGGAAGAATACC 19410980 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | ||||| || ||| ||| ||||||||| | || || || || || || Sbjct 19410981 ATTAGATGTTCCATTCGTGCCACGAATGTAACTTCCTGTCGCACGGATGTTGTGAACTGA 19411040 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || || || || |||| || | ||||| |||||||| ||||| || Sbjct 19411041 AACACCAATACCCCCAGCTGATTTACTTATAACTGCACACTCCTTCAATGTATCATAAAT 19411100 Query 69930 ACCCTCTATGCTATCATCTATCATG 69954 ||||| |||||||| || ||||| Sbjct 19411101 TCCCTCAATGCTATCGTCCTTCATG 19411125 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| | ||| || | || ||||| || ||||| |||||| | | ||| | | || | Sbjct 19411249 GTTCCTGAATTGAAGAGAGTCGGAGACGCATGAGTAAACCATCTCTGAGACATTAAATGG 19411308 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || |||| || || || || ||||| | ||||| || | | || | ||| | | Sbjct 19411309 TAAGTTTTGATTGCGGAATCAATATCTTCTTTGTGAATGCCAACAGAAACCCTCATGAGC 19411368 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 ||||||||||||| || ||| ||| || | ||| || ||||||||| | || || Sbjct 19411369 ATATGCTGAGGTCTCTCAACCACTTTCCCATGGACTTTTAAGAGGTATGATCTCTCAAGT 19411428 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| |||||||| |||| ||| ||| || | || ||||| || Sbjct 19411429 GTTTTGAACCCAAAGTAGTCGTACTCAAAATCACGATCATAAATGAT 19411475 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 69081 AAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATT 69140 ||| |||||||||||||| | || ||||| |||||||||||||| ||||| | | | || Sbjct 15958087 AAGGATAAATGCATCTGCAAGACCTTGAACACCAATACCGATAGGCCTATGACGCATGTT 15958028 Query 69141 TGAACTTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATT 69197 |||| ||| || | ||| | |||||| | ||| | ||| || || ||||| ||||| Sbjct 15958027 TGAAGTTTTAGCCGTCT-CCACAGGATAGTGATTCACATCAATGATCTTATTGAGATT 15957971 >seq159 Length=194462 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | || | ||||| | ||| | || | |||||| |||| |||||| Sbjct 113797 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACCCGCAGCATTGGAACAATACC 113738 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 |||||| |||||| || ||| ||| |||||||| || || || || ||| || Sbjct 113737 ATTAGAAGCACCATTAGTGCCACGAATGTAACTTCCAGAAGCACGGATGTTGTGAATTGA 113678 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | |||||| || || || |||| || | ||||| ||||||||| |||||||| Sbjct 113677 AACACCTATACCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTATCATATAT 113618 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| ||||||||||| ||||| | ||||| ||||| Sbjct 113617 CCCCTCAATGCTATCATCCTTCATGCAGATCAGAAAGCAGCT 113576 >seq6 Length=38054609 Score = 111 bits (122), Expect = 2e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| || || | || | ||||| | ||| | || | |||||| |||| ||||||| Sbjct 36615723 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAACACCCGCAGCATTGGAACAATACCA 36615782 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 ||||||| ||||| || ||| ||| |||||||| | || || || || || ||| Sbjct 36615783 TTAGATTCTCCATTAGTGCCACGAATGTAACTTCCAGTAGCACGGATGTTGTGAACAGAA 36615842 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| || || || || |||| || | ||||| ||||||||| ||||| || Sbjct 36615843 ACACCAATACCCCCAGCTGATTTACTTATAACCGCACACTCTTTCAATGTATCATAAATC 36615902 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| ||||||||||| ||||| | ||||| ||||| Sbjct 36615903 CCCTCAATGCTATCATCCTTCATGCAGATCAGAAAGCAGCT 36615943 Score = 109 bits (120), Expect = 8e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| | ||||| | || |||||||| |||||||||||| | ||| | | || Sbjct 36616049 AGTTCCAGAGTTAAAGAGAGTCGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATG 36616108 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||| || | | |||||| || |||||| | |||||| || | | || | ||| | Sbjct 36616109 GTAAGTCTGGACAGCTGAATCAATATCCTGTTTATGAATGCCAACAGAAACCCTCATGAG 36616168 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| |||||||| | ||| ||| ||| || | |||||| ||||||||| | || || Sbjct 36616169 CATGTGCTGAGGCCTTTCAACCACTTTCCCATGGACTTTCAAGAGGTATGATCTCTCAAG 36616228 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||| || || || || |||| ||| |||||| | |||||||| || Sbjct 36616229 AGTCTTGAATCCGAAGTAGTCATATTCAAAGTCCCGGTCGTAAATGAT 36616276 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 68733 TAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAG 68792 ||| ||||| ||| | ||||| || |||||| || || | | |||||||||| || || Sbjct 36613924 TAAGACTCTGCGACTATAAATGTTTGAGGTATACGGCTCAAAACATTCATTATTCCCAAG 36613983 Query 68793 AATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATG 68852 ||| || ||||| ||||||||||| ||||| || || | | |||||||| |||| Sbjct 36613984 AATCTGGCTGGTTGAAGCAGTTGGCATTGGTGCTACTAAAAGAGAATTTCTAATTCCATT 36614043 Query 68853 TGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCA 68912 | || ||||| | ||| ||| ||||| |||| || || | |||||||| Sbjct 36614044 CTTCGAAATCATATCTCTGAGAGCAGCCCAGTCCCAGCGATCCGAAGGAATCACATTCCA 36614103 Query 68913 AAGATCGTATTGTAGAATTCC 68933 | || ||||||||| || Sbjct 36614104 CATGTCAGGTTGTAGAATACC 36614124 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 69081 AAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATT 69140 |||||||||||||||||| | || || || |||||||| ||||| ||||| | | | || Sbjct 36614461 AAGAATAAATGCATCTGCAAGACCTTGCACACCAATACCAATAGGCCTATGACGCATGTT 36614520 Query 69141 TGAACTTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATT 69197 |||| ||| || | ||| |||||||| | ||| | ||| || || ||||| ||||| Sbjct 36614521 TGAAGTTTTAGCCGTCT-CCATAGGATAGTGATTCACATCAATTATCTTATTGAGATT 36614577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686825117335440