Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq133 105 5e-18 seq3 89.7 4e-13 seq1 87.8 1e-12 seq18 82.4 6e-11 >seq133 Length=227095 Score = 105 bits (116), Expect = 5e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 41004 CGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCT 41063 ||||| || ||| ||| || ||||| || | ||| | | |||||||| | || || Sbjct 171755 CGACGGATTATAATGTCGGCTTGGAATCCTTCTGACCTTAAGCTGATGGCACTTCCTCCA 171814 Query 41064 TGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAA 41123 || || |||| ||||||||||||| |||||| || || ||||||||| ||||||| Sbjct 171815 TGCCACATGTTTGCTCAGTTTTACGTTGCCAATGGAGAGCTTTCATGTCAAATGTATCAG 171874 Query 41124 AGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGC 41164 | |||| ||| ||||| || || || ||||||||||| || Sbjct 171875 CGCTCAGCTGATATGGGTCTTGGTGTACCGTTTAACATTGC 171915 >seq3 Length=43957692 Score = 89.7 bits (98), Expect = 4e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 40993 ATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGG 41052 |||| ||| || || |||||| ||| || ||||| || | ||| | | |||||| Sbjct 40985566 ATCCTGATGATCGCCGGATAATAATGTCAGCTTGGAATCCTTCTGACCTTAAGCTGATGG 40985507 Query 41053 CATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTC 41112 || | || ||||| || |||| |||||||||||| || || || || || |||| Sbjct 40985506 CACTTCCTCCTTGCCACATGTTTGCACAGTTTTACGTTGCAAACGGAGAGCTCTCGTGTC 40985447 Query 41113 AATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGC 41164 || ||||||| | |||| || ||||| || || || ||||||||||| || Sbjct 40985446 AAATGTATCAGCGCTCAGCAGATATGGGTCTTGGTGTACCGTTTAACATTGC 40985395 Score = 89.7 bits (98), Expect = 4e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 40993 ATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGG 41052 |||| ||| || || |||||| ||| || ||||| || | ||| | | |||||| Sbjct 41004544 ATCCTGATGATCGCCGGATAATAATGTCAGCTTGGAATCCTTCTGACCTTAAGCTGATGG 41004485 Query 41053 CATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTC 41112 || | || ||||| || |||| |||||||||||| || || || || || |||| Sbjct 41004484 CACTTCCTCCTTGCCACATGTTTGCACAGTTTTACGTTGCAAACGGAGAGCTCTCGTGTC 41004425 Query 41113 AATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGC 41164 || ||||||| | |||| || ||||| || || || ||||||||||| || Sbjct 41004424 AAATGTATCAGCGCTCAGCAGATATGGGTCTTGGTGTACCGTTTAACATTGC 41004373 >seq1 Length=45320942 Score = 87.8 bits (96), Expect = 1e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 41004 CGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCT 41063 || || || ||| ||| || ||||| || | ||| | | |||||||| | || || Sbjct 9627984 CGGCGGATTATAATGTCTGCTTGGAATCCTTCTGACCTTAAGCTGATGGCACTTCCTCCA 9628043 Query 41064 TGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAA 41123 || || |||| ||||||||||||| ||||| || || || |||||| ||||||| Sbjct 9628044 TGCCACATGTTTGCTCAGTTTTACGTTGCGAATGGAGAGCTTTCGTGTCAAATGTATCAG 9628103 Query 41124 AGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGC 41164 | |||| ||| ||||| || || || || |||||||| || Sbjct 9628104 CGCTCAGCTGATATGGGTCTTGGTGTACCTTTTAACATTGC 9628144 >seq18 Length=77673080 Score = 82.4 bits (90), Expect = 6e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 |||||||| | || ||||| || |||| |||||||| ||| ||||| || || | Sbjct 76170291 TGATGGCACTTCCTCCTTGCCACATGTTTGCACAGTTTTATGTTGCAAATGGAGAGCTTT 76170232 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGC 41164 | |||||| ||||||| | |||| |||||||| || || || ||||||||||| || Sbjct 76170231 CGTGTCAAATGTATCAGCGGTCAGCAGACATGGGTCTTGGTGTACCGTTTAACATTGC 76170174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397408790424730