Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 1e-14 >seq2 Length=25468329 Score = 96.9 bits (106), Expect = 1e-14 Identities = 318/480 (66%), Gaps = 26/480 (5%) Strand=Plus/Minus Query 443406 GAACGCGATTTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGT 443465 || ||| | ||| ||||| | || | |||||||| || | |||||| |||||| Sbjct 22244170 GAGCGCCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCGTCCTC 22244111 Query 443466 GAGAATCTGGTGACGCGTTTC---TACGAAATGGTAGTGTACACCGAGGCCCGCTACTTC 443522 |||||||| | | || ||| | ||| || || | ||||||| || |||| Sbjct 22244110 GAGAATCTCGCCTCCCGGTTCATGTCCGACGTGCAGGTCT---CCGAGGCGCGTGCCTTC 22244054 Query 443523 TACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAG 443582 |||| |||||| ||| || ||||| || ||| | ||| | ||||| | ||| | || Sbjct 22244053 TACGGGTTCCAGATCGCGATTGAGAATATCCACTCGGAGATGTACAGCCTCTTGCT--AG 22243996 Query 443583 ACAC-TAATTCC-GAACGAAGACGAACAGCGGTCCATCTTCTCATCG---TTCATGACCA 443637 | || || || | || || | | | || || |||||| || || || | ||||| Sbjct 22243995 ATACGTACATCAAGGAC-AACAAGGAGAG-GGACCATCTCTTCCGCGCGATTGA-GACCA 22243939 Query 443638 CGCCAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAATCTCA 443697 || || || | | ||| | | ||||| ||||| |||| || ||||| Sbjct 22243938 TCCCTTGCGTCGCGAAGAAGGCCCAATGGGCCTTGAAGTGGATCGACGGA-----TCTCA 22243884 Query 443698 GC--TTCGTCGAGCGACTAGTCGCTTTTGCTGTG-GTCGAAGGACTGTTGTTTAGCGGCA 443754 | |||| |||| | | || || || || ||| || ||||| | || || ||| | Sbjct 22243883 GACTTTCGCCGAGAGGATCGTGGCCTTCGC-GTGCGTGGAAGGGATCTTCTTCTCCGGAA 22243825 Query 443755 GCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGT 443814 |||| || |||||||||||| | || ||||| || || |||| || || ||||| Sbjct 22243824 GCTTCTGC-TCCATCTTCTGGCTCAAGAAGCGAGGGCTCATGCCGGGGCTCACCTTCTCC 22243766 Query 443815 AACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACC 443874 ||||| |||||| |||||||| || | || ||||||||||| || || |||| ||| Sbjct 22243765 AACGAGCTGATCTCGCGGGACGAAGGCCTTCACTGCGACTTCGCGTGCCTGATCTATACC 22243706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588137663490970