Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq18 131 2e-25 seq16 123 3e-23 seq2 122 1e-22 seq8 104 3e-17 seq6 102 1e-16 seq12 84.2 3e-11 >seq18 Length=77673080 Score = 131 bits (144), Expect = 2e-25 Identities = 193/271 (71%), Gaps = 7/271 (3%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| || || ||||| | ||||| || || || |||||| || || |||||||| || Sbjct 68188297 GTGAAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTCAACCCGGGCATGAGCCC 68188356 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | |||||| |||| || || || |||||||||||||| ||||| || Sbjct 68188357 TCGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATCCCTTCCACGCA 68188416 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 130206 |||||| || | || | ||| || || | ||||| ||| | |||| |||| || Sbjct 68188417 CGCGAAGGCCACGATCCTCTCGGCGAAAGTCTGGGAC---CCATCGATCCACGTCATGGC 68188473 Query 130207 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 130266 ||| || ||||| ||| ||| || |||| ||||| |||||| ||||| | | | | Sbjct 68188474 CCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATCGCGCGGAAGAGATGGTCCCT 68188533 Query 130267 TTC--TGATGGATCTTTGATGTACTTATCTA 130295 || || || || ||||||||| | |||| Sbjct 68188534 CTCCTTGTTG--TCCTTGATGTACGTGTCTA 68188562 >seq16 Length=18736220 Score = 123 bits (136), Expect = 3e-23 Identities = 189/269 (70%), Gaps = 3/269 (1%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| || || ||||| | ||||| || || || |||||| || || |||||||| || Sbjct 836940 GTGCAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCC 836881 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | |||||| |||| || || || |||||||||||||| ||||| || Sbjct 836880 ACGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTCCCCGAGAAGAAGATCCCTTCCACGCA 836821 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 130206 || ||||| | || | ||| ||||||| | || | || | |||| |||| || Sbjct 836820 AGCAAACGCCACGATCCTCTCGGCAAAGGCCTGTGA---TCCGTCGATCCACGTCATGGC 836764 Query 130207 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 130266 ||| || ||||| ||| ||| || |||| |||| |||||| ||||| | | | | Sbjct 836763 CCATTGGGCCTTCTTCGCGACGCAGGGGATCGTCTCGATCGCGCGGAAGAGATGGTCCCT 836704 Query 130267 TTCTGATGGATCTTTGATGTACTTATCTA 130295 ||| ||| |||||||| |||||| Sbjct 836703 CTCTCTATTATCCTTGATGTAAGTATCTA 836675 Score = 96.9 bits (106), Expect = 4e-15 Identities = 144/204 (71%), Gaps = 3/204 (1%) Strand=Plus/Minus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 || ||||| || ||||| | || || |||||| || ||| |||||||| || || ||| Sbjct 7908958 CCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTCAAACCAGGCATGAGCCCTCGTTTC 7908899 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | | |||| |||| ||| || ||| ||||||||||||| || || || ||||| Sbjct 7908898 TTGAGCAAGAAGATCGTACAGAAGCTGCCGGAGAAGAAGATCCTTTCGACGCAGGCGAAG 7908839 Query 130154 GCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGC 130213 || | || | ||| || |||| | || | || | |||| |||||| |||||| Sbjct 7908838 GCGACGATTCTCTCCGCGAAGGTCTGAGA---TCCGTCGATCCACGTCATCGACCACTGA 7908782 Query 130214 GCCTTTTTCTCGATACACGGGACG 130237 || || ||| ||| || || ||| Sbjct 7908781 GCTTTCTTCACGAAGCAAGGAACG 7908758 >seq2 Length=25468329 Score = 122 bits (134), Expect = 1e-22 Identities = 191/271 (70%), Gaps = 7/271 (3%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| || || ||||| || ||||| || || || |||||| || || |||||||| || Sbjct 22243733 GTGAAGGCCTTCGTCCCGCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCC 22243792 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | |||||| || | || || || |||||||||||||| ||||| || Sbjct 22243793 TCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCA 22243852 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 130206 |||||| || | || | ||| || || | | || | || | |||||||| || Sbjct 22243853 CGCGAAGGCCACGATCCTCTCGGCGAAAGTCTGAGA---TCCGTCGATCCACTTCAAGGC 22243909 Query 130207 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 130266 ||| || ||||| ||| ||| || |||| ||||| ||||| ||||| | | | | Sbjct 22243910 CCATTGGGCCTTCTTCGCGACGCAAGGGATGGTCTCAATCGCGCGGAAGAGATGGTCCCT 22243969 Query 130267 TTC--TGATGGATCTTTGATGTACTTATCTA 130295 || || || || ||||||||| |||||| Sbjct 22243970 CTCCTTGTTG--TCCTTGATGTACGTATCTA 22243998 >seq8 Length=29345952 Score = 104 bits (114), Expect = 3e-17 Identities = 326/497 (66%), Gaps = 16/497 (3%) Strand=Plus/Minus Query 14063 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 14122 || ||||| || ||||| | || | |||| |||||| |||||| | || || || Sbjct 28985217 CGGTCAAAACGCCCTGGTCTCAGCAAGGCGGAGTCAAGAATATCAGCTCTATTAGTAGCA 28985158 Query 14123 GCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGA 14179 || | |||| | || || |||| ||||| |||||||||||||||||||| ||| Sbjct 28985157 GCAACAACAATAACACCAGT---GTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGA 28985101 Query 14180 TTGATGGTTTGTTCGCGTTCATCATT---CGCAGGCATACCACCCGCACTGCGTTGCTTA 14236 || | || || || | ||||||||| || || ||| | | || ||| || Sbjct 28985100 TTCAAAGTCTGCTCTCTTTCATCATTACCTCCACCAATCCCAGTCCCTCT---CTGCCTA 28985044 Query 14237 CCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCA 14296 || || || ||||| || || | || || ||||| || ||| ||| || | Sbjct 28985043 CCAACAGCATCAATCTCGTCCACAAAGACAATACACGGAGCATTCTCATTAGCCTTATTG 28984984 Query 14297 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 14356 || | ||| ||||| ||| ||||| ||||| ||||||||||| ||||| | | | Sbjct 28984983 AAAAGATCACGCACCCTCGAAGCACCAACACCAACAAACATCTCAACAAACTCAGACCCC 28984924 Query 14357 GAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 14415 | | || | || ||| || || | |||||| || |||||| ||| | ||| || || Sbjct 28984923 G-AGATGGAGAAGAAAGGCACACCGGCTTCACCAGCAATGGCTTTGGCCAAGAGAGTTTT 28984865 Query 14416 CCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC-ACTGCCAA 14474 || || || || || ||||||| |||| ||||||| ||||| || | || Sbjct 28984864 ACCAGTACCAGGAGGACCAACGAGAAGAACACCTTTAGGGATCCGAGCACCGACCG-CAG 28984806 Query 14475 AGTAGCGTTCAGGTTGTTTAAGGAAGTCCACGATTTCTTCCAATTCATCCTTCGCGGCGT 14534 | | | ||||| | || || || ||||| | ||| || |||| ||| || | | Sbjct 28984805 TGAACCTCTCAGGCTTCTTGAGAAACTCCACCACTTCCATGAAGTCATGCTTGGCTTCAT 28984746 Query 14535 CGATGCCTTCAACGTCA 14551 ||| || |||| ||| Sbjct 28984745 CGACTCCAGCAACATCA 28984729 >seq6 Length=38054609 Score = 102 bits (112), Expect = 1e-16 Identities = 156/222 (70%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| || || ||||| || ||||| | || || |||||| | || |||||||| || Sbjct 29820143 GTGAAGGCCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAACCCAGGCATGAGCCC 29820084 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||||| |||||| |||| || || || |||||||||||||| ||||| || Sbjct 29820083 TCGCTTCTTCAGCCAGAAGATCGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCA 29820024 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 130206 || ||||| | || | ||| || || | | || | || | |||| |||| || Sbjct 29820023 AGCAAACGCCACGATCCTCTCGGCGAAAGTCTGAGA---TCCGTCGATCCACGTCATGGC 29819967 Query 130207 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 ||| || ||||| ||| ||| || || | ||| | ||||| Sbjct 29819966 CCATTGGGCCTTCTTCGCGACGCAAGGTATGGTTTCAATCGC 29819925 >seq12 Length=60369500 Score = 84.2 bits (92), Expect = 3e-11 Identities = 324/500 (65%), Gaps = 22/500 (4%) Strand=Plus/Minus Query 14063 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 14122 || ||||| || || || | || | |||| |||||| |||||| | ||| || || Sbjct 11969693 CGGTCAAAACGGCCGGGTCTAAGCAAGGCGGAGTCAAGAATATCAGCTCTGTTGGTTGCA 11969634 Query 14123 GCGATGACAACGATG---CCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGT 14176 || | ||||||| || || |||| ||||| ||||||||||| |||| || Sbjct 11969633 GCAA---CAACGATAACACCAGT---GTTACCTTCAAAACCATCCATCTCCGTCAGAAGC 11969580 Query 14177 TGATTGATGGTTTGTTCGCGTTCATCATTCGC---AGGCATACCACCCGCACTGCGTTGC 14233 || || | || ||||| | ||||||||| | | |||||| | || |||| Sbjct 11969579 TGGTTAAGCGTCTGTTCTCTTTCATCATTACCTCCACCAATACCAGTTCCTCT---TTGC 11969523 Query 14234 TTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACT 14293 |||| || || ||||| ||||| | || || ||||| || || || ||| | Sbjct 11969522 CTACCAACAGCATCAATCTCATCCACAAAGACAATACAAGGAGCGTTCTCCTTGGCCTTT 11969463 Query 14294 TCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCG 14353 | || | ||| || || ||| ||||| ||||| ||||||||||| ||||| | | Sbjct 11969462 TTGAAAAGATCACGGACCCTCGAAGCACCAACACCGACAAACATCTCAACAAACTCAGAA 11969403 Query 14354 GCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGT 14412 | | | || | | ||| || ||| || |||||| || ||||| || | ||| || Sbjct 11969402 CCCG-AGATGGAAAAGAACGGTACGCCAGCTTCACCAGCAATGGCCTTTGCCAAGAGTGT 11969344 Query 14413 CTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC-ACTGC 14471 ||||| || || || || | || || |||| ||||||| ||||| || | Sbjct 11969343 TTTCCCAGTACCGGGAGGACCAACTAGGAGAACACCTTTCGGGATCCGAGCACCGACCG- 11969285 Query 14472 CAAAGTAGCGTTCAGGTTGTTTAAGGAAGTCCACGATTTCTTCCAATTCATCCTTCGCGG 14531 || | | | ||||| | || || || ||||| | ||| || || | ||| || Sbjct 11969284 CAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACTTCCATGAAGTCTTGCTTGGCTT 11969225 Query 14532 CGTCGATGCCTTCAACGTCA 14551 | |||| || |||||||| Sbjct 11969224 CATCGACTCCAGCAACGTCA 11969205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618359859131760