Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 7e-14 >seq1 Length=45320942 Score = 91.5 bits (100), Expect = 7e-14 Identities = 142/201 (71%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 65087 CGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTC 65146 ||||| ||||| |||||| |||| | || || || ||||| |||| | ||| | Sbjct 20596662 CGTGTGCCAAATTGACCAATTGGTTGAAGTAGGTTTATGTTGTTGCTGCCAACATAATCC 20596603 Query 65147 TGAGCCATTCCGATAATTG--CTGCATTTAAACTCGCTTCACCGTGATGATATCCTGAAT 65204 || ||||| ||||| || | ||| | | |||| || |||||||||||| | |||| Sbjct 20596602 TGCGCCATACCGATGATCGTACTGGCT--AGACTCTGCTCGCCGTGATGATATGCCGAAT 20596545 Query 65205 GTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCGTTGTTAAATTCTTTTTAA 65264 | || || ||||| ||| ||||| |||| || ||| |||| |||||| |||||| Sbjct 20596544 GCTCTGATACATAACCAGAGAATTGGCCAACCTTGGCCTCCTTTGTGAAATTCCTTTTAA 20596485 Query 65265 ATGCAGAATACAATATTTTCC 65285 | | | || | | |||||||| Sbjct 20596484 ACGAACAAAAAAGTATTTTCC 20596464 Score = 82.4 bits (90), Expect = 4e-11 Identities = 139/200 (70%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 65087 CGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTC 65146 ||||| ||||| ||||||||||| | | || || ||||| |||| | ||| | Sbjct 13920143 CGTGTGCCAAATTGACCATTTGGTTGAAGCAGGTTTATGTTGTTGCTGCCAACATAATCC 13920202 Query 65147 TGAGCCATTCCGATAATTG---CTGCATTTAAACTCGCTTCACCGTGATGATATCCTGAA 65203 || ||||| || || || | | ||| | |||| || |||||||||||| | || Sbjct 13920203 TGCGCCATGCCAATGATCGTACCGGCA---AGACTCTGCTCGCCGTGATGATATGCCGAG 13920259 Query 65204 TGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCGTTGTTAAATTCTTTTTA 65263 || ||||| ||||| ||| ||||| ||||| || ||| |||| |||||| ||||| Sbjct 13920260 TGCTCAGATACATAACCAGAGAATTGGGCAACCTTGGCCTCCTTTGTGAAATTCCTTTTA 13920319 Query 65264 AATGCAGAATACAATATTTT 65283 || | | || | | ||| || Sbjct 13920320 AACGAACAAAAAAGTATCTT 13920339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235652006076900