Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq16 179 4e-40 seq2 168 7e-37 seq18 161 1e-34 seq6 132 5e-26 >seq16 Length=18736220 Score = 179 bits (198), Expect = 4e-40 Identities = 369/537 (69%), Gaps = 19/537 (4%) Strand=Plus/Plus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||| |||||||| | || |||||| ||| |||||| | |||||| || ||||| Sbjct 836411 TGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTCTCCCAAGACC 836470 Query 59653 TGAAGGATTGGGAC---AAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGG 59709 || ||||| || ||||| ||| |||| || ||| |||| ||||| | Sbjct 836471 CCCGCGACTGGGAGGAAAATCTCAACGACGGAGAGCGCCACTTCGTCAAACACGTCCTCG 836530 Query 59710 CCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAG- 59768 |||||||||| || || || || || | || || | | | | |||| | | Sbjct 836531 CCTTCTTCGCCGCATCCGACGGGATCGTCCTCGAGAACCTCGCCTCT--CGTTTC-ATGT 836587 Query 59769 --GATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCT 59825 || |||||| | |||||||||| | ||||||| || ||| ||| | |||| Sbjct 836588 CCGACGTCCAGGTCTCCGAGGCCCGCGCCTTCTACGGGTTCCAGATCGCG-ATCGAGAAC 836646 Query 59826 ATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAG 59885 ||||||||||||| |||| ||| || | |||| | |||||||| ||||| | Sbjct 836647 ATCCACTCCGAGATGTACAGTCTCCTGTTAGATACTTACATCAAGGATAATAGAGAGAGG 836706 Query 59886 GCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGC 59944 | ||| ||||| || || |||||| ||||| || || | || || ||||||| Sbjct 836707 GACCATCTCTTCCGCGCGATCGAGACGATCCCCTGC-GTCGCGAAGAAGGCCCAATGGGC 836765 Query 59945 CATGCAGTGGATGAGTCCTGGAGCAT---CATTTGCACAACGTCTCATAGCTTTTGCATG 60001 |||| |||||| | | ||| || | ||||| | | || | || ||||| || Sbjct 836766 CATGACGTGGATC-GAC--GGATCACAGGCCTTTGCCGAGAGGATCGTGGCGTTTGCTTG 836822 Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061 ||||||||| ||||||||||| || ||||| | || ||||||||||| |||||||| Sbjct 836823 CGTGGAAGGGATCTTCTTCTCGGGGAGCTTCTGCTCGATCTTCTGGCTCAAGAAGCGTGG 836882 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 ||||||||||| || | ||||||||||||||||| || | ||||| ||||| || Sbjct 836883 GCTCATGCCGGGGCTCACCTTCTCCAACGAGCTGATCTCGAGAGACGAAGGCCTGCA 836939 Score = 96.9 bits (106), Expect = 4e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 || || || ||||| ||| | ||||||||||| ||| |||||| | || |||| |||| Sbjct 7908837 GCCTTCGCCTGCGTCGAAAGGATCTTCTTCTCCGGCAGCTTCTGTACGATCTTCTTGCTC 7908896 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || || || || |||||||| || ||| |||||||||||| |||| || || ||||| Sbjct 7908897 AAGAAACGAGGGCTCATGCCTGGTTTGACCTTCTCCAACGAGTTGATCTCTCGAGACGAA 7908956 Query 60111 GGC 60113 ||| Sbjct 7908957 GGC 7908959 >seq2 Length=25468329 Score = 168 bits (186), Expect = 7e-37 Identities = 367/538 (68%), Gaps = 21/538 (4%) Strand=Plus/Minus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||| |||||||| | || |||||| ||| |||||| | |||||| || |||| Sbjct 22244262 TGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTCTCCCAAGACA 22244203 Query 59653 TGAAGGATTGGGA---CAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGG 59709 || ||||| ||| ||||| ||| ||||| || |||||||| ||||| | Sbjct 22244202 CCCGCGACTGGGAGACCAACCTCAACGACGGCGAGCGCCACTTCATCAAACACGTCCTCG 22244143 Query 59710 CCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACAT---GAACTTTTCCA 59766 |||||||||| || || ||||| || | || ||| | | | | | | ||| Sbjct 22244142 CCTTCTTCGCCGCCTCCGACGGAATCGTCCTCGAGAATCTCGCCTCCCGGTTCATGTCC- 22244084 Query 59767 AGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCT 59825 || || ||| | ||||||| || | ||||||| || ||| ||| | ||| | Sbjct 22244083 --GACGTGCAGGTCTCCGAGGCGCGTGCCTTCTACGGGTTCCAGATCGCG-ATTGAGAAT 22244027 Query 59826 ATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAG 59885 |||||||| |||| |||| ||| || | |||| || ||||||| | |||| | Sbjct 22244026 ATCCACTCGGAGATGTACAGCCTCTTGCTAGATACGTACATCAAGGACAACAAGGAGAGG 22243967 Query 59886 GCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGC 59944 | ||| ||||| || || ||||| |||| || || | || || ||||||| Sbjct 22243966 GACCATCTCTTCCGCGCGATTGAGACCATCCCTTGC-GTCGCGAAGAAGGCCCAATGGGC 22243908 Query 59945 CATGCAGTGGATGAGTCCTGGAGCATCA----TTTGCACAACGTCTCATAGCTTTTGCAT 60000 | || ||||||| | | ||| | ||| || || | | || | || || || | Sbjct 22243907 CTTGAAGTGGATC-GAC--GGATC-TCAGACTTTCGCCGAGAGGATCGTGGCCTTCGCGT 22243852 Query 60001 GCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTG 60060 |||||||||| ||||||||||| || ||||| | || ||||||||||| ||||| | Sbjct 22243851 GCGTGGAAGGGATCTTCTTCTCCGGAAGCTTCTGCTCCATCTTCTGGCTCAAGAAGCGAG 22243792 Query 60061 GCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 | ||||||||||| || | ||||||||||||||||| || |||||||| ||||| || Sbjct 22243791 GGCTCATGCCGGGGCTCACCTTCTCCAACGAGCTGATCTCGCGGGACGAAGGCCTTCA 22243734 >seq18 Length=77673080 Score = 161 bits (178), Expect = 1e-34 Identities = 376/556 (68%), Gaps = 22/556 (4%) Strand=Plus/Minus Query 59574 TACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAG 59633 |||||| | | |||| |||| ||||| || | || |||||| ||| |||||| Sbjct 68188842 TACCCGCAGATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAA 68188783 Query 59634 ATTGACCTCGCC--GGAGACCTGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATT 59691 | |||||| || ||| || | || ||||| || ||||| ||| |||| || | Sbjct 68188782 GTCGACCTCTCCCAGGACACACGC--GACTGGGAGAATCTCAACGACGGAGAGCGCCACT 68188725 Query 59692 TCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAG 59751 ||||||| ||||| ||||||||||| || || ||||| || | || || | | Sbjct 68188724 TCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCGTCCTCGAGAACCTCG 68188665 Query 59752 ACATGAACTTTTCCAAG---GATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATC 59808 | || ||| | | || |||||| | ||||||| || | ||||||| || | Sbjct 68188664 CCTC--ACGGTTC-ATGTCCGACGTCCAGGTCTCCGAGGCGCGCGCCTTCTACGGGTTCC 68188608 Query 59809 AG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTC 59867 || ||| | |||| ||||||||||||| |||| ||| || | || | || || Sbjct 68188607 AGATCGCG-ATCGAGAACATCCACTCCGAGATGTACAGCCTCCTGTTAGACACGTACATC 68188549 Query 59868 AAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAA 59926 ||||| | |||| || ||| ||||| || || ||||| ||||| || || Sbjct 68188548 AAGGACAACAAGGAGAGGGACCATCTCTTCCGCGCGATCGAGACCATCCCCTGC-GTCGC 68188490 Query 59927 ACAAAAAGCAGAATGGGCCATGCAGTGGAT----GAGTCCTGGAGCATCATTTGCACAAC 59982 | || || ||||||||||| |||||| | |||| || | || || | Sbjct 68188489 GAAGAAGGCCCAATGGGCCATGACGTGGATCGATGGGTCCCAGA----CTTTCGCCGAGA 68188434 Query 59983 GTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTT 60042 | || | || || || ||||||||||| ||||||||||| || ||||| | || | Sbjct 68188433 GGATCGTGGCCTTCGCGTGCGTGGAAGGGATCTTCTTCTCCGGTAGCTTCTGCTCGATCT 68188374 Query 60043 TCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCC 60102 |||||||||| ||||| || |||||||| || ||| ||||||||||||||||| || Sbjct 68188373 TCTGGCTCAAGAAGCGAGGGCTCATGCCCGGGTTGACCTTCTCCAACGAGCTGATCTCGA 68188314 Query 60103 GGGACGAGGGCCTCCA 60118 | ||||| ||||| || Sbjct 68188313 GAGACGAAGGCCTTCA 68188298 >seq6 Length=38054609 Score = 132 bits (146), Expect = 5e-26 Identities = 368/554 (66%), Gaps = 18/554 (3%) Strand=Plus/Plus Query 59574 TACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAG 59633 |||||| | | |||| |||| ||||| || | || |||||| ||| ||| || Sbjct 29819598 TACCCGCAGATCTGGGAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAAGAA 29819657 Query 59634 ATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTC 59693 | || ||| || |||| || ||||| || ||||| ||| |||| || ||| Sbjct 29819658 GTCGATCTCTCCCAAGACACTCGCGACTGGGAGAATCTCAACGACGGAGAGCGCCACTTC 29819717 Query 59694 ATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGAC 59753 ||||| ||||| ||||||||||| || || ||||| || | || ||| | | | Sbjct 29819718 ATCAAACACGTCCTCGCCTTCTTCGCCGCATCCGACGGAATCGTTTTAGAGAATCTCGCC 29819777 Query 59754 AT---GAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG 59810 | | | ||| || || || | ||||||| || | ||||||| || ||| Sbjct 29819778 TCCCGGTTCATGTCC---GACGTGCAAGTCTCCGAGGCGCGTGCCTTCTACGGGTTCCAG 29819834 Query 59811 -TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAA 59869 ||| | ||| ||||||||| |||| |||| ||| || |||| | || |||| Sbjct 29819835 ATCGCG-ATTGAGAATATCCACTCAGAGATGTACAGCCTCCTGCTCGACACGTACATCAA 29819893 Query 59870 GGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAAC 59928 |||| |||||| || || ||||| || || || || | || || || Sbjct 29819894 GGATAATAAAGAGAGGGACCACCTCTTCCGCGCGATTGAAACCATACCTTGC-GTCGCGA 29819952 Query 59929 AAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGCATCA----TTTGCACAACGT 59984 | || || ||||||||||| |||||| | | ||| | ||| || || | | Sbjct 29819953 AGAAGGCCCAATGGGCCATGACGTGGATC-GAC--GGATC-TCAGACTTTCGCCGAGAGG 29820008 Query 59985 CTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTC 60044 || | || ||||| ||||||||||| ||||||||||| || ||||| | || ||| Sbjct 29820009 ATCGTGGCGTTTGCTTGCGTGGAAGGGATCTTCTTCTCCGGAAGCTTCTGCTCGATCTTC 29820068 Query 60045 TGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGG 60104 ||||| || ||||| || |||||||| || | | |||||||||||| |||| || || Sbjct 29820069 TGGCTGAAGAAGCGAGGGCTCATGCCTGGGTTAACCTTCTCCAACGAGTTGATCTCTCGA 29820128 Query 60105 GACGAGGGCCTCCA 60118 ||||| ||||| || Sbjct 29820129 GACGAAGGCCTTCA 29820142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548457975966240