Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq18 109 4e-19 seq1 104 2e-17 seq3 100 2e-16 seq133 86.0 5e-12 >seq18 Length=77673080 Score = 109 bits (120), Expect = 4e-19 Identities = 214/315 (68%), Gaps = 6/315 (2%) Strand=Plus/Plus Query 29884 CACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAG 29943 ||||| || | || |||||||| || || | | |||| ||| || || || | || Sbjct 7477130 CACGTGATTTCGATACACGTGAGCATCCCCAATGACATGGATAAAATCACCAGGAACAAG 7477189 Query 29944 CCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTAC 30003 || || ||||| | |||| | || || ||||||||| || |||||||| || || Sbjct 7477190 ATCGCACACATGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCAC 7477249 Query 30004 CCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCAC 30063 ||||| ||||| ||| | || | ||| || | |||||||||||||| ||||| ||| Sbjct 7477250 ACCGAGGCCCATATCCGCTGAACGCTGATACATTTGACACGAGAGCTCCCCGTCCACCAC 7477309 Query 30064 GTAAAACTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGG 30120 ||| ||||| |||| |||||| |||||||| ||||| | | || || Sbjct 7477310 GTAGAACTGTGCGAACAT---GTGGCATGGAGGAAGCGCCATCAACTTGAGATCAGAAGG 7477366 Query 30121 GTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGC 30180 ||||| || | | ||||| || | || || || |||||| |||| ||| | | Sbjct 7477367 ATTCCAAGCCGATAATATGATACGACGATCATCAGGATTGTTCTTGATCTTGTCGATTAC 7477426 Query 30181 GTTTTGCAGCTGATC 30195 || | | |||||||| Sbjct 7477427 GTCTAGGAGCTGATC 7477441 >seq1 Length=45320942 Score = 104 bits (114), Expect = 2e-17 Identities = 159/223 (71%), Gaps = 8/223 (4%) Strand=Plus/Minus Query 29950 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 30009 ||||||||| | ||| | || || || ||||| ||| |||||||| ||||| || || Sbjct 9628181 GACGTGAGCTAGAATGCATGTAAGAAGGGAGTATGAGGCAATGTTAAAAGGTACACCAAG 9628122 Query 30010 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGT-CGCTCACGTAAA 30068 ||||| || | || | ||| || | |||||||| |||||||| | ||| ||||||| Sbjct 9628121 ACCCATATCAGCTGAGCGCTGATACATTTGACACGAAAGCTCTCCATTCGCA-ACGTAAA 9628063 Query 30069 ACTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCC 30125 |||| | |||| |||||| |||||||| ||||| || | ||| || |||| Sbjct 9628062 ACTGAGCAAACAT---GTGGCATGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCC 9628006 Query 30126 AGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30168 | || ||| || || |||| || || || |||||| |||| Sbjct 9628005 AAGCAGACATTATAATCCGCCGATCGTCAGGATTGTTCTTGAT 9627963 Score = 96.9 bits (106), Expect = 3e-15 Identities = 187/275 (68%), Gaps = 6/275 (2%) Strand=Plus/Plus Query 29897 TAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29956 || || ||||| || || | | |||||||| || || || | || | || ||| Sbjct 31775350 TACACATGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAGATCACACACATGA 31775409 Query 29957 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATG 30016 || | |||| | || || ||||||||| || |||||||| || || || || | ||| Sbjct 31775410 GCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCTCATA 31775469 Query 30017 TCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTG---A 30073 ||| | || | ||| || | ||| || |||||||| || || ||| || ||||| | Sbjct 31775470 TCCGCTGAACGCTGATACATCTGGCATGAGAGCTCCCCTTCCGCCACATAGAACTGCGCA 31775529 Query 30074 CACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCAC 30133 ||||| ||||||||||| || ||||| || | ||| |||||||| || | Sbjct 31775530 AACATG---TGGCACGGAGGCAGCGCCATCAGCTTGAGGTCAGAAGGGTTCCAAGCAGAT 31775586 Query 30134 ACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30168 | |||| |||| || || || |||||| |||| Sbjct 31775587 AATCTGATACGCCGATCATCAGGATTGTTCTTGAT 31775621 >seq3 Length=43957692 Score = 100 bits (110), Expect = 2e-16 Identities = 156/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 29950 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 30009 ||| ||||| | ||| | || || || ||||| ||| |||||||| ||||| || || Sbjct 40985358 GACATGAGCTAGGATGCATGTAAGAAGTGAGTATGAGGCAATGTTAAACGGTACACCAAG 40985417 Query 30010 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAA 30069 ||||| || | || | ||| || | ||||||||||||||||||| |||||||| Sbjct 40985418 ACCCATATCTGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCGTTTGCAACGTAAAA 40985477 Query 30070 CTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCA 30126 ||| | |||| |||||| |||||||| ||||| || | ||| || ||||| Sbjct 40985478 CTGTGCAAACAT---GTGGCAAGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCA 40985534 Query 30127 GGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30168 || ||| || || || | || || || |||||| |||| Sbjct 40985535 AGCTGACATTATTATCCGGCGATCATCAGGATTGTTCTTGAT 40985576 Score = 100 bits (110), Expect = 2e-16 Identities = 156/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 29950 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 30009 ||| ||||| | ||| | || || || ||||| ||| |||||||| ||||| || || Sbjct 41004336 GACATGAGCTAGGATGCATGTAAGAAGTGAGTATGAGGCAATGTTAAACGGTACACCAAG 41004395 Query 30010 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAA 30069 ||||| || | || | ||| || | ||||||||||||||||||| |||||||| Sbjct 41004396 ACCCATATCTGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCGTTTGCAACGTAAAA 41004455 Query 30070 CTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCA 30126 ||| | |||| |||||| |||||||| ||||| || | ||| || ||||| Sbjct 41004456 CTGTGCAAACAT---GTGGCAAGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCA 41004512 Query 30127 GGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30168 || ||| || || || | || || || |||||| |||| Sbjct 41004513 AGCTGACATTATTATCCGGCGATCATCAGGATTGTTCTTGAT 41004554 Score = 96.9 bits (106), Expect = 3e-15 Identities = 187/275 (68%), Gaps = 6/275 (2%) Strand=Plus/Minus Query 29897 TAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29956 || || ||||| || || | | |||||||| || || || | || | || ||| Sbjct 31765884 TACACATGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAGATCACACACATGA 31765825 Query 29957 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATG 30016 || | |||| | || || ||||||||| || |||||||| || || || || | ||| Sbjct 31765824 GCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCTCATA 31765765 Query 30017 TCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTG---A 30073 ||| | || | ||| || | ||| || |||||||| || || ||| || ||||| | Sbjct 31765764 TCCGCTGAACGCTGATACATCTGGCATGAGAGCTCCCCTTCCGCCACATAGAACTGCGCA 31765705 Query 30074 CACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCAC 30133 ||||| ||||||||||| || ||||| || | ||| |||||||| || | Sbjct 31765704 AACATG---TGGCACGGAGGCAGCGCCATCAGCTTGAGGTCAGAAGGGTTCCAAGCAGAT 31765648 Query 30134 ACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30168 | |||| |||| || || || |||||| |||| Sbjct 31765647 AATCTGATACGCCGATCATCAGGATTGTTCTTGAT 31765613 Score = 96.9 bits (106), Expect = 3e-15 Identities = 187/275 (68%), Gaps = 6/275 (2%) Strand=Plus/Plus Query 29897 TAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29956 || || ||||| || || | | |||||||| || || || | || | || ||| Sbjct 31809857 TACACATGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAGATCACACACATGA 31809916 Query 29957 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATG 30016 || | |||| | || || ||||||||| || |||||||| || || || || | ||| Sbjct 31809917 GCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCTCATA 31809976 Query 30017 TCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTG---A 30073 ||| | || | ||| || | ||| || |||||||| || || ||| || ||||| | Sbjct 31809977 TCCGCTGAACGCTGATACATCTGGCATGAGAGCTCCCCTTCCGCCACATAGAACTGCGCA 31810036 Query 30074 CACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCAC 30133 ||||| ||||||||||| || ||||| || | ||| |||||||| || | Sbjct 31810037 AACATG---TGGCACGGAGGCAGCGCCATCAGCTTGAGGTCAGAAGGGTTCCAAGCAGAT 31810093 Query 30134 ACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30168 | |||| |||| || || || |||||| |||| Sbjct 31810094 AATCTGATACGCCGATCATCAGGATTGTTCTTGAT 31810128 >seq133 Length=227095 Score = 86.0 bits (94), Expect = 5e-12 Identities = 153/222 (69%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 29950 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 30009 ||| ||||| | || | || || || ||||| ||| |||||||| ||||| || || Sbjct 171952 GACATGAGCGAGGATACATGTAAGAAGGGAGTATGAGGCAATGTTAAACGGTACACCAAG 171893 Query 30010 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAA 30069 ||||| || | || | ||| || | ||||| || |||||||| | | |||||||| Sbjct 171892 ACCCATATCAGCTGAGCGCTGATACATTTGACATGAAAGCTCTCCATTGGCAACGTAAAA 171833 Query 30070 CTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCA 30126 ||| | |||| |||||| |||||||| ||||| || | ||| || ||||| Sbjct 171832 CTGAGCAAACAT---GTGGCATGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCA 171776 Query 30127 GGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30168 || ||| || || || | || || || |||||| |||| Sbjct 171775 AGCCGACATTATAATCCGTCGATCGTCAGGATTGTTCTTGAT 171734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406262138704632