Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq14 194 2e-44 seq8 104 3e-17 >seq14 Length=28343526 Score = 194 bits (214), Expect = 2e-44 Identities = 188/242 (78%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 176455 TGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 176514 ||||||||||||| | | || || || ||||||||||| ||||||||| || | || Sbjct 20845014 TGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATTGCTGTTGCATATTCAGATCCT 20845073 Query 176515 GTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGAT 176574 || | | || || | |||||| | ||| ||| | | ||||||| ||| |||||| Sbjct 20845074 GTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATTGATCAAGGAAGTTTTTCTGAT 20845133 Query 176575 GGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCAC 176634 |||||||||| || || || ||||| |||||||||||| ||||||||||| | |||||| Sbjct 20845134 AGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTCCAAACTGAGCAC 20845193 Query 176635 AACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTT 176694 |||||||| ||||||||||| || ||| | || ||||| ||||| || || || |||||| Sbjct 20845194 AACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCTCTT 20845253 Query 176695 TT 176696 || Sbjct 20845254 TT 20845255 >seq8 Length=29345952 Score = 104 bits (114), Expect = 3e-17 Identities = 98/121 (81%), Gaps = 3/121 (2%) Strand=Plus/Plus Query 176576 GTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACA 176635 |||||||||| | || || ||||| |||||||||||| |||||||||| || ||||||| Sbjct 6844673 GTATGCCTCTAGA-ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACA 6844731 Query 176636 ACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTT 176695 ||||||| ||||| ||||| || ||| | || ||||| ||||| || || || || || | Sbjct 6844732 ACATTCTTATGCA-CCATTTCA-ATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTAT 6844789 Query 176696 T 176696 | Sbjct 6844790 T 6844790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603420879294720