Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq3 118 1e-21 seq1 118 1e-21 >seq3 Length=43957692 Score = 118 bits (130), Expect = 1e-21 Identities = 209/297 (70%), Gaps = 6/297 (2%) Strand=Plus/Plus Query 34484 GACCAGCT-GCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGT 34542 || ||||| |||| |||| ||||||| | ||| || |||||||| | | ||| Sbjct 31765586 GATCAGCTCGCAG-ACGTAATCGACAAGATCAAGAACAATCCTGATGATCGGCGTATCAG 31765644 Query 34543 GATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCT 34602 | | || |||||||| || ||| ||||||||||| || |||||||||| | Sbjct 31765645 ATTATCTGCTTGGAACCCTTCTGACCTCAAGCTGATGGCGCTGCCTCCGTGCCACA-TGT 31765703 Query 34603 CTGC-CAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAG 34661 ||| || ||||| || ||| | |||||||| || |||||| | ||||| || || | | Sbjct 31765704 TTGCGCAGTTCTATGTGGCGGAAGGGGAGCTCTCATGCCAGATGTATCAGCGTTCAGCGG 31765763 Query 34662 ACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCG 34721 | ||| | | || |||||||| ||||||||| ||| |||| || || | |||| | | Sbjct 31765764 ATATGAGCCTTGGTGTGCCGTTTAACATTGCTTCCTACTCTCTTCTTACTTGCATGCTAG 31765823 Query 34722 CTCATGTCGTGGGGT-TGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCAT 34777 ||||||| ||| | | | || ||||| || | || ||| | |||||||| ||| Sbjct 31765824 CTCATGT-GTGTGATCTTGTCCCTGGTGATTTTGTCCATGTCATTGGGGATGCTCAT 31765879 Score = 118 bits (130), Expect = 1e-21 Identities = 209/297 (70%), Gaps = 6/297 (2%) Strand=Plus/Minus Query 6568 ATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCA-ACCCCACGACATGAGCGA 6626 ||| |||||||| | ||| || | || ||||| || | | | ||| |||||||| | Sbjct 31765879 ATGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAGATCACAC-ACATGAGCTA 31765821 Query 6627 TCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTC 6686 |||| | || || |||| ||| ||||||||| |||||||| || | | ||| || Sbjct 31765820 GCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCTCATATCCG 31765761 Query 6687 CCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTG-GCAGAGG 6745 | || || ||||| | |||||| || |||||||| | ||| || ||||| || ||| | Sbjct 31765760 CTGAACGCTGATACATCTGGCATGAGAGCTCCCCTTCCGCCACATAGAACTGCGCAAACA 31765701 Query 6746 GTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACG 6805 |||||||||| || ||||||||||| ||| || |||||||| || | | | Sbjct 31765700 -TGTGGCACGGAGGCAGCGCCATCAGCTTGAGGTCAGAAGGGTTCCAAGCAGATAATCTG 31765642 Query 6806 ATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC-AGCTGGTC 6861 || | | |||||||| || ||| | ||||||| |||| |||| ||||| || Sbjct 31765641 ATACGCCGATCATCAGGATTGTTCTTGATCTTGTCGATTACGT-CTGCGAGCTGATC 31765586 Score = 118 bits (130), Expect = 1e-21 Identities = 209/297 (70%), Gaps = 6/297 (2%) Strand=Plus/Plus Query 6568 ATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCA-ACCCCACGACATGAGCGA 6626 ||| |||||||| | ||| || | || ||||| || | | | ||| |||||||| | Sbjct 31809862 ATGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAGATCACAC-ACATGAGCTA 31809920 Query 6627 TCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTC 6686 |||| | || || |||| ||| ||||||||| |||||||| || | | ||| || Sbjct 31809921 GCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCTCATATCCG 31809980 Query 6687 CCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTG-GCAGAGG 6745 | || || ||||| | |||||| || |||||||| | ||| || ||||| || ||| | Sbjct 31809981 CTGAACGCTGATACATCTGGCATGAGAGCTCCCCTTCCGCCACATAGAACTGCGCAAACA 31810040 Query 6746 GTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACG 6805 |||||||||| || ||||||||||| ||| || |||||||| || | | | Sbjct 31810041 -TGTGGCACGGAGGCAGCGCCATCAGCTTGAGGTCAGAAGGGTTCCAAGCAGATAATCTG 31810099 Query 6806 ATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC-AGCTGGTC 6861 || | | |||||||| || ||| | ||||||| |||| |||| ||||| || Sbjct 31810100 ATACGCCGATCATCAGGATTGTTCTTGATCTTGTCGATTACGT-CTGCGAGCTGATC 31810155 Score = 118 bits (130), Expect = 1e-21 Identities = 209/297 (70%), Gaps = 6/297 (2%) Strand=Plus/Minus Query 34484 GACCAGCT-GCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGT 34542 || ||||| |||| |||| ||||||| | ||| || |||||||| | | ||| Sbjct 31810155 GATCAGCTCGCAG-ACGTAATCGACAAGATCAAGAACAATCCTGATGATCGGCGTATCAG 31810097 Query 34543 GATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCT 34602 | | || |||||||| || ||| ||||||||||| || |||||||||| | Sbjct 31810096 ATTATCTGCTTGGAACCCTTCTGACCTCAAGCTGATGGCGCTGCCTCCGTGCCACA-TGT 31810038 Query 34603 CTGC-CAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAG 34661 ||| || ||||| || ||| | |||||||| || |||||| | ||||| || || | | Sbjct 31810037 TTGCGCAGTTCTATGTGGCGGAAGGGGAGCTCTCATGCCAGATGTATCAGCGTTCAGCGG 31809978 Query 34662 ACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCG 34721 | ||| | | || |||||||| ||||||||| ||| |||| || || | |||| | | Sbjct 31809977 ATATGAGCCTTGGTGTGCCGTTTAACATTGCTTCCTACTCTCTTCTTACTTGCATGCTAG 31809918 Query 34722 CTCATGTCGTGGGGT-TGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCAT 34777 ||||||| ||| | | | || ||||| || | || ||| | |||||||| ||| Sbjct 31809917 CTCATGT-GTGTGATCTTGTCCCTGGTGATTTTGTCCATGTCATTGGGGATGCTCAT 31809862 >seq1 Length=45320942 Score = 118 bits (130), Expect = 1e-21 Identities = 209/297 (70%), Gaps = 6/297 (2%) Strand=Plus/Plus Query 6568 ATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCA-ACCCCACGACATGAGCGA 6626 ||| |||||||| | ||| || | || ||||| || | | | ||| |||||||| | Sbjct 31775355 ATGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAGATCACAC-ACATGAGCTA 31775413 Query 6627 TCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTC 6686 |||| | || || |||| ||| ||||||||| |||||||| || | | ||| || Sbjct 31775414 GCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCTCATATCCG 31775473 Query 6687 CCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTG-GCAGAGG 6745 | || || ||||| | |||||| || |||||||| | ||| || ||||| || ||| | Sbjct 31775474 CTGAACGCTGATACATCTGGCATGAGAGCTCCCCTTCCGCCACATAGAACTGCGCAAACA 31775533 Query 6746 GTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACG 6805 |||||||||| || ||||||||||| ||| || |||||||| || | | | Sbjct 31775534 -TGTGGCACGGAGGCAGCGCCATCAGCTTGAGGTCAGAAGGGTTCCAAGCAGATAATCTG 31775592 Query 6806 ATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC-AGCTGGTC 6861 || | | |||||||| || ||| | ||||||| |||| |||| ||||| || Sbjct 31775593 ATACGCCGATCATCAGGATTGTTCTTGATCTTGTCGATTACGT-CTGCGAGCTGATC 31775648 Score = 118 bits (130), Expect = 1e-21 Identities = 209/297 (70%), Gaps = 6/297 (2%) Strand=Plus/Minus Query 34484 GACCAGCT-GCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGT 34542 || ||||| |||| |||| ||||||| | ||| || |||||||| | | ||| Sbjct 31775648 GATCAGCTCGCAG-ACGTAATCGACAAGATCAAGAACAATCCTGATGATCGGCGTATCAG 31775590 Query 34543 GATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCT 34602 | | || |||||||| || ||| ||||||||||| || |||||||||| | Sbjct 31775589 ATTATCTGCTTGGAACCCTTCTGACCTCAAGCTGATGGCGCTGCCTCCGTGCCACA-TGT 31775531 Query 34603 CTGC-CAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAG 34661 ||| || ||||| || ||| | |||||||| || |||||| | ||||| || || | | Sbjct 31775530 TTGCGCAGTTCTATGTGGCGGAAGGGGAGCTCTCATGCCAGATGTATCAGCGTTCAGCGG 31775471 Query 34662 ACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCG 34721 | ||| | | || |||||||| ||||||||| ||| |||| || || | |||| | | Sbjct 31775470 ATATGAGCCTTGGTGTGCCGTTTAACATTGCTTCCTACTCTCTTCTTACTTGCATGCTAG 31775411 Query 34722 CTCATGTCGTGGGGT-TGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCAT 34777 ||||||| ||| | | | || ||||| || | || ||| | |||||||| ||| Sbjct 31775410 CTCATGT-GTGTGATCTTGTCCCTGGTGATTTTGTCCATGTCATTGGGGATGCTCAT 31775355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448207790433120