Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq18 104 2e-17 seq3 98.7 8e-16 seq1 95.1 1e-14 >seq18 Length=77673080 Score = 104 bits (114), Expect = 2e-17 Identities = 186/272 (68%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 118456 AGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGT 118515 ||||| || ||| ||| | |||||| ||| || |||||||||||||| ||| Sbjct 7477110 AGTTGCTCTTGCAGAGGCCTCACGTGATTTCGATACACGTGAGCATCCCCAATGACATGG 7477169 Query 118516 ATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAG 118575 || || |||||||| ||| | || ||||| | |||| | || | | | |||| Sbjct 7477170 ATAAAATCACCAGGAACAAGATCGCACACATGAGCTAGCATGCAAGTAAGAAGAGAGTAG 7477229 Query 118576 CTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAA 118635 || | ||||| || ||||| || ||||| || ||||| | ||| |||| ||| || Sbjct 7477230 GAAGCAATGTTAAACGGCACACCGAGGCCCATATCCGCTGAACGCTGATACATTTGACAC 7477289 Query 118636 GAGAGCTCCCCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATG 118695 ||||||||||||| | || || ||||| | ||||| |||||||| || |||| Sbjct 7477290 GAGAGCTCCCCGTCCACCACGTAGAACTGTGCGAACATGTGGCATGGAGGAAGCGCCATC 7477349 Query 118696 GAACTCAGTTGGGCAGGATTCCAGGCTGTTAA 118727 | | || | | ||||||||| || | ||| Sbjct 7477350 AACTTGAGATCAGAAGGATTCCAAGCCGATAA 7477381 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 118585 TTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCC 118644 ||||| || ||||| ||||||||||||||||| | ||| |||| ||| || || ||||| Sbjct 76170180 TTAAACGGTACACCAAGACCCATGTCTGCTGACCGCTGATACATTTGACACGAAAGCTCT 76170239 Query 118645 CCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 || ||||||||||||||||| | ||||| || ||||| || |||| Sbjct 76170240 CCATTTGCAACATAAAACTGTGCAAACATGTGGCAAGGAGGAAGTGCCAT 76170289 >seq3 Length=43957692 Score = 98.7 bits (108), Expect = 8e-16 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 118585 TTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCC 118644 ||||| || ||||| |||||||| |||||||| | ||| |||| ||| || |||||||| Sbjct 40985401 TTAAACGGTACACCAAGACCCATATCTGCTGAGCGCTGATACATTTGACACGAGAGCTCT 40985460 Query 118645 CCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATGGAACTCAGT 118704 ||||||||||| |||||||| | ||||| || ||||| || |||| | || Sbjct 40985461 CCGTTTGCAACGTAAAACTGTGCAAACATGTGGCAAGGAGGAAGTGCCATCAGCTTAAGG 40985520 Query 118705 TGGGCAGGATTCCAGGCTG 118723 | | ||||||||| |||| Sbjct 40985521 TCAGAAGGATTCCAAGCTG 40985539 Score = 98.7 bits (108), Expect = 8e-16 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 118585 TTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCC 118644 ||||| || ||||| |||||||| |||||||| | ||| |||| ||| || |||||||| Sbjct 41004379 TTAAACGGTACACCAAGACCCATATCTGCTGAGCGCTGATACATTTGACACGAGAGCTCT 41004438 Query 118645 CCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATGGAACTCAGT 118704 ||||||||||| |||||||| | ||||| || ||||| || |||| | || Sbjct 41004439 CCGTTTGCAACGTAAAACTGTGCAAACATGTGGCAAGGAGGAAGTGCCATCAGCTTAAGG 41004498 Query 118705 TGGGCAGGATTCCAGGCTG 118723 | | ||||||||| |||| Sbjct 41004499 TCAGAAGGATTCCAAGCTG 41004517 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 118488 ATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGGTG 118547 ||| ||||||||||||||||| ||| | || |||||||| ||| | || || Sbjct 31765885 ATACACATGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAGATCACACACATG 31765826 Query 118548 AGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCCAT 118607 ||| | |||| | || | | | |||| || | ||||| || ||||| || | ||| Sbjct 31765825 AGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCTCAT 31765766 Query 118608 GTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTGACT 118667 || ||||| | ||| |||| ||||| ||||||||||| | || ||||| ||||| Sbjct 31765765 ATCCGCTGAACGCTGATACATCTGGCATGAGAGCTCCCCTTCCGCCACATAGAACTGCGC 31765706 Query 118668 TATGATGTGACATGGAGGCAGAACCAT 118694 | ||||| || |||||||| |||| Sbjct 31765705 AAACATGTGGCACGGAGGCAGCGCCAT 31765679 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 118488 ATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGGTG 118547 ||| ||||||||||||||||| ||| | || |||||||| ||| | || || Sbjct 31809856 ATACACATGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAGATCACACACATG 31809915 Query 118548 AGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCCAT 118607 ||| | |||| | || | | | |||| || | ||||| || ||||| || | ||| Sbjct 31809916 AGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCTCAT 31809975 Query 118608 GTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTGACT 118667 || ||||| | ||| |||| ||||| ||||||||||| | || ||||| ||||| Sbjct 31809976 ATCCGCTGAACGCTGATACATCTGGCATGAGAGCTCCCCTTCCGCCACATAGAACTGCGC 31810035 Query 118668 TATGATGTGACATGGAGGCAGAACCAT 118694 | ||||| || |||||||| |||| Sbjct 31810036 AAACATGTGGCACGGAGGCAGCGCCAT 31810062 >seq1 Length=45320942 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 118488 ATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGGTG 118547 ||| ||||||||||||||||| ||| | || |||||||| ||| | || || Sbjct 31775349 ATACACATGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAGATCACACACATG 31775408 Query 118548 AGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCCAT 118607 ||| | |||| | || | | | |||| || | ||||| || ||||| || | ||| Sbjct 31775409 AGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCTCAT 31775468 Query 118608 GTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTGACT 118667 || ||||| | ||| |||| ||||| ||||||||||| | || ||||| ||||| Sbjct 31775469 ATCCGCTGAACGCTGATACATCTGGCATGAGAGCTCCCCTTCCGCCACATAGAACTGCGC 31775528 Query 118668 TATGATGTGACATGGAGGCAGAACCAT 118694 | ||||| || |||||||| |||| Sbjct 31775529 AAACATGTGGCACGGAGGCAGCGCCAT 31775555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414427568704744