Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq13 102 6e-17 seq1 95.1 9e-15 seq5 91.5 1e-13 seq6 89.7 4e-13 seq18 87.8 1e-12 seq12 87.8 1e-12 seq3614 84.2 2e-11 seq10 84.2 2e-11 seq9 84.2 2e-11 >seq13 Length=83567108 Score = 102 bits (112), Expect = 6e-17 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||||||||| || | || || || ||| || | || || || ||| || Sbjct 39908183 ATGCAAATTTTTGTGAAGACCTTGACAGGAAAGACTATCACTTTGGAGGTGGAGAGCTCC 39908242 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || |||| |||||| || || |||||||| ||| | || ||| | Sbjct 39908243 GATACCATTGACAAC--GTCAAAGCCAAGATCCAAGACAAAGAGGGTATCCCACCGGACC 39908300 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 |||| |||| || ||||||||||| ||| | || || | ||| | |||| | |||||| Sbjct 39908301 AGCAGAGGTTGATCTTTGCCGGAAAGCAACTTGAGGATGGACGTACTCTTG-CTGATTAC 39908359 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||| || ||| ||| | || ||||| |||||| | ||||| ||| Sbjct 39908360 AACATCCAGAAGGAGTCGACTCTTCACTTGGTCTTGCGTCTACGTGGTGGC 39908410 >seq1 Length=45320942 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || || ||| | || || || ||| || | || || |||||| || Sbjct 18861789 ATGCAAATCTTCGTTAAGACTTTGACGGGAAAGACTATCACTTTGGAGGTTGAAAGCTCC 18861730 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | |||| |||||| || || |||||||| ||| | || ||| | Sbjct 18861729 GACACTATTGACAAC--GTCAAAGCCAAGATCCAAGACAAAGAGGGTATCCCACCGGACC 18861672 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || ||||| ||||| || | || || | |||| |||| | ||||||| Sbjct 18861671 AGCAGAGGTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGTCGCACCTTGGCAGATTACA 18861612 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||| || ||| || | || ||||| |||||| | ||||| ||| Sbjct 18861611 ACATCCAGAAGGAGTCTACGCTTCACTTGGTCTTGCGTCTTCGTGGAGGC 18861562 >seq5 Length=38841276 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 27903 GGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGA 27962 ||| ||||| |||| || ||||||||||| || ||||| || | |||| |||| | || Sbjct 24217477 GGACCAGCAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAAGATGGTCGCACCTTGGCGGA 24217536 Query 27963 TTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||| || |||||| ||| | || ||||| |||||| | ||||| ||| Sbjct 24217537 TTACAACATTCAGAAAGAGTCAACTCTTCACTTGGTCTTGCGTCTACGTGGAGGC 24217591 >seq6 Length=38054609 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||||||||| || || || || || |||| || |||||| | Sbjct 21964704 ATGCAGATCTTTGTGAAAACTCTCACCGGAAAGACCATCACCCTTGAGGTGGAAAGCTCT 21964763 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || |||| || | || | || | | || ||||| ||||| |||| || Sbjct 21964764 GACACCATCGACAA-CGTTAAAGCCAAGATTCAG--GACAAGGAAGGCATTCCTCCTGAT 21964820 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || | || || |||||||| || ||||| |||| | | |||| | |||||| Sbjct 21964821 CAGCAGAGGCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCAGGACCTTGGCTGATTAC 21964880 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 || ||||| || ||| || | || |||| |||||| | ||||| ||| Sbjct 21964881 AATATCCAGAAGGAGTCTACGCTCCACCTGGTCTTGCGTCTACGTGGAGGC 21964931 >seq18 Length=77673080 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || ||||| || ||||| || || || || | || || |||||| | Sbjct 47092228 ATGCAGATCTTCGTGAAGACACTTACCGGAAAGACCATCACCCTCGAGGTTGAAAGCTCT 47092287 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| |||||| || || ||||| || ||| | || ||| | Sbjct 47092288 GACACCATTGACAAC--GTCAAAGCCAAGATCCAGGACAAGGAGGGTATCCCACCGGACC 47092345 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || |||||||| || || | || |||| || | |||| |||| |||| Sbjct 47092346 AGCAGAGGTTGATCTTTGCCGGGAAGCAGCTCGAAGACGGTCGTACCTTGGCCGACTACA 47092405 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| || | || ||||| ||||| ||||||| || Sbjct 47092406 ACATCCAAAAGGAGTCGACGCTTCACTTGGTGCTGCGTCTGCGTGGTGG 47092454 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || ||||| || ||||| || || || || | || || |||||| | Sbjct 47107257 ATGCAGATCTTCGTGAAGACACTTACCGGAAAGACCATCACCCTCGAGGTTGAAAGCTCT 47107198 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| |||||| || || ||||| || ||| | || ||| | Sbjct 47107197 GACACCATTGACAAC--GTCAAAGCCAAGATCCAGGACAAGGAGGGTATCCCACCGGACC 47107140 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || |||||||| || || | || |||| || | |||| |||| |||| Sbjct 47107139 AGCAGAGGTTGATCTTTGCCGGGAAGCAGCTCGAAGACGGTCGTACCTTGGCCGACTACA 47107080 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| || | || ||||| ||||| ||||||| || Sbjct 47107079 ACATCCAAAAGGAGTCGACGCTTCACTTGGTGCTGCGTCTGCGTGGTGG 47107031 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || ||||| || ||||| || || || || | || || |||||| | Sbjct 47110717 ATGCAGATCTTCGTGAAGACACTTACCGGAAAGACCATCACCCTCGAGGTTGAAAGCTCT 47110658 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| |||||| || || ||||| || ||| | || ||| | Sbjct 47110657 GACACCATTGACAAC--GTCAAAGCCAAGATCCAGGACAAGGAGGGTATCCCACCGGACC 47110600 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || |||||||| || || | || |||| || | |||| |||| |||| Sbjct 47110599 AGCAGAGGTTGATCTTTGCCGGGAAGCAGCTCGAAGACGGTCGTACCTTGGCCGACTACA 47110540 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| || | || ||||| ||||| ||||||| || Sbjct 47110539 ACATCCAAAAGGAGTCGACGCTTCACTTGGTGCTGCGTCTGCGTGGTGG 47110491 >seq12 Length=60369500 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| ||||| | || || || ||| || | || || || ||| || Sbjct 48264772 ATGCAGATTTTTGTTAAAACATTGACGGGAAAGACTATCACTTTGGAGGTTGAGAGCTCC 48264831 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| |||||| || || |||||||| ||| |||| ||| | Sbjct 48264832 GACACCATTGACAAT--GTCAAAGCCAAGATCCAAGACAAAGAGGGTATTCCCCCGGACC 48264889 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 |||| |||| || || || || || ||| | || || | ||| | |||| | |||||| Sbjct 48264890 AGCAGAGGTTGATCTTCGCAGGCAAGCAACTCGAGGATGGACGTACTCTTG-CTGATTAC 48264948 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||| ||| | || ||||| ||||| | ||||| || Sbjct 48264949 AACATCCAGAAGGAGTCGACTCTTCACTTGGTCTTGCGACTACGTGGAGG 48264998 >seq3614 Length=4742 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || ||||| || ||||| || || || || | || || |||||| | Sbjct 854 ATGCAGATCTTCGTGAAGACACTTACCGGAAAGACCATCACCCTCGAGGTTGAAAGCTCT 795 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | || |||||| || || ||||| || ||| | || ||| | Sbjct 794 GACACCATTGATAAC--GTCAAAGCCAAGATCCAGGACAAGGAGGGTATCCCACCGGACC 737 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || |||||||| || || | || |||| || | |||| |||| |||| Sbjct 736 AGCAGAGGTTGATCTTTGCCGGGAAGCAGCTCGAAGACGGTCGTACCTTGGCCGACTACA 677 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| || | || ||||| ||||| ||||||| || Sbjct 676 ACATCCAAAAGGAGTCGACGCTTCACTTGGTGCTGCGTCTGCGTGGTGG 628 >seq10 Length=22354415 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| |||||||| ||| | || || || |||||| | || || |||||| | Sbjct 21870338 AATGCAAATATTTGTGAAGACTTTGACAGGCAAGACTATTACCTTGGAAGTTGAAAGCTC 21870397 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || ||||| || || || || ||||| ||||| |||| ||| Sbjct 21870398 AGACACAATCGACAAT--GTGAAGGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGAC 21870455 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTA 27965 || || | | || || || || ||||| | || || | |||| ||||| | ||||| Sbjct 21870456 CAACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGCACGCTTG-CAGATTA 21870514 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||| || || ||| ||| ||||||||||| ||||| | ||||| || Sbjct 21870515 CAACATTCAGAAGGAGTCGACTCTGCATTTGGTTCTGCGTCTTCGTGGTGG 21870565 >seq9 Length=62778564 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| |||| ||| ||||| |||| || ||||||||||| ||| | || Sbjct 30497250 GACAAGGAAGGCATTCCTCCGGACCAGCAGAGGTTGATCTTTGCCGGAAAGCAACTTGAA 30497309 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| | | ||| | || |||||||||||||| ||| || | || ||||| ||| Sbjct 30497310 GACGGCAGAACATTGGCGGACTACAACATCCAAAAGGAGTCTACACTTCACTTGGTGTTG 30497369 Query 28003 CGTTTGCGTGGCGG 28016 ||| ||||||| || Sbjct 30497370 CGTCTGCGTGGAGG 30497383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355820130886542